Task #11988 (new)
Opened 5 years ago
Last modified 3 years ago
Kymograph horizontal line
| Reported by: | wmoore | Owned by: | wmoore |
|---|---|---|---|
| Priority: | major | Milestone: | Unscheduled |
| Component: | Scripting | Version: | 5.0.0-beta2-RC3 |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Kymograph error, when ROI is nearly parallel to the x axis. Error report, File "/home/omero/OMERO-CURRENT/lib/python/omero/gateway/init.py", line 2893, in createImageFromNumpySeq raise exc ZeroDivisionError?: float division.
Change History (3)
comment:1 Changed 5 years ago by wmoore
comment:2 Changed 5 years ago by wmoore
See fix for similar bug in Plot_Profile.py https://github.com/ome/scripts/pull/89
comment:3 Changed 3 years ago by jamoore
- Milestone set to Unscheduled
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You may also have a look at Agilo extensions to the ticket.
Also need to investigate this stacktrace - from a very small 20 x 20 pixel image (see https://github.com/ome/scripts/pull/71#issuecomment-38151265):
WARNING:omero.gateway:InternalException on <class 'omero.gateway.OmeroGatewaySafeCallWrapper'> to <c72cabfa-ba4b-46a1-93cb-65097db2a6e4omero.api.RawPixelsStore> getTile((1, 0, 0, 0, 0, -2, 5), {}) Traceback (most recent call last): File "/home/omero/slave/workspace/OMERO-5.0-merge-daily/src/dist/lib/python/omero/gateway/__init__.py", line 3539, in __call__ return self.f(*args, **kwargs) File "/home/omero/slave/workspace/OMERO-5.0-merge-daily/src/dist/lib/python/omero_api_RawPixelsStore_ice.py", line 189, in getTile return _M_omero.api.RawPixelsStore._op_getTile.invoke(self, ((z, c, t, x, y, w, h), _ctx)) InternalException: exception ::omero::InternalException { serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.NegativeArraySizeException): null at ome.services.RawPixelsBean.getTile(RawPixelsBean.java:781) at sun.reflect.GeneratedMethodAccessor1550.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) }}