Task #12083 (closed)
Opened 10 years ago
Closed 9 years ago
Bug: NPE when parsing FEI TIFF metadata
Reported by: | omero-qa | Owned by: | mlinkert |
---|---|---|---|
Priority: | minor | Milestone: | 5.1.1 |
Component: | Bio-Formats | Version: | 5.0.0 |
Keywords: | n.a. | Cc: | ellen.arena@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
https://www.openmicroscopy.org/qa2/qa2/qa/feedback/7956/
java.lang.NullPointerException at loci.formats.in.FEITiffReader.initStandardMetadata(FEITiffReader.java:139) at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99) at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:545) at loci.formats.FormatReader.setId(FormatReader.java:1360) at loci.formats.ImageReader.setId(ImageReader.java:781) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576) at loci.formats.ChannelFiller.setId(ChannelFiller.java:263) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576) at loci.formats.Memoizer.setId(Memoizer.java:471) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576) at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:414) at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:595) at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:371) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229) at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180) at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:6374) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1140) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:695)
Originally reported against 5.0.0-rc1; confirmed with current dev_5_0.
Change History (2)
comment:1 Changed 9 years ago by mlinkert
- Component changed from from QA to Bio-Formats
- Milestone changed from Unscheduled to 5.1.1
comment:2 Changed 9 years ago by jburel
- Resolution set to fixed
- Status changed from new to closed
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Moving to 5.1.1 for triage.