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Task #12091 (closed)

Opened 10 years ago

Closed 10 years ago

Bug: ImageJ exporter exception exporting RGB images

Reported by:	rleigh	Owned by:	mlinkert
Priority:	major	Milestone:	5.0.3
Component:	Bio-Formats	Version:	5.0.0
Keywords:	n.a.	Cc:	p.van.loon@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

To reproduce

File->New
create RGB image
Plugins->Bio-Formats exporter
exception thrown

ImageJ 1.47v; Java 1.7.0_51 [64-bit]; Mac OS X 10.9.2; 32MB of 658MB (4%)
 
java.lang.IllegalArgumentException: ZCT size vs image count mismatch (sizeZ=1, sizeC=3, sizeT=1, total=1)
	at loci.formats.FormatTools.getZCTCoords(FormatTools.java:467)
	at loci.plugins.out.Exporter.run(Exporter.java:592)
	at loci.plugins.LociExporter.run(LociExporter.java:77)
	at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:262)
	at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:111)
	at ij.IJ.runUserPlugIn(IJ.java:197)
	at ij.IJ.runPlugIn(IJ.java:160)
	at ij.Executer.runCommand(Executer.java:128)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:744)

References

Change History (2)

comment:1 Changed 10 years ago by mlinkert

Milestone changed from Unscheduled to 5.0.3

comment:2 Changed 10 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

PR opened: https://github.com/openmicroscopy/bioformats/pull/1175

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