id summary reporter owner description type status priority milestone component version resolution keywords cc drp_resources i_links o_links remaining_time sprint 12110 "BUG:bfconvert exports only one channel using -z and -timepoint arguments" bramalingam mlinkert "Image used : No of z-sections : 20 No of Time points : 1 No of Channels : 3 Error : The default export seems to export only one channel, (it is expected to convert all 3 channels). Command line call : ls29010:tools bramalingam$ ./bfconvert /Users/bramalingam/Desktop/Batch_Image_Export/SMN10ul03_R3D_D3D.dv.ome.tif -compression LZW -z 1 /Users/bramalingam/Desktop/test11q.ome.tif /Users/bramalingam/Desktop/Batch_Image_Export/SMN10ul03_R3D_D3D.dv.ome.tif OMETiffReader initializing /Users/bramalingam/Desktop/Batch_Image_Export/SMN10ul03_R3D_D3D.dv.ome.tif Reading IFDs Populating metadata [OME-TIFF] -> /Users/bramalingam/Desktop/test11q.ome.tif [OME-TIFF] Exception in thread ""main"" loci.formats.FormatException: Plane index:21 must be < 3 at loci.formats.FormatWriter.checkParams(FormatWriter.java:386) at loci.formats.out.TiffWriter.saveBytes(TiffWriter.java:174) at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:201) at loci.formats.out.OMETiffWriter.saveBytes(OMETiffWriter.java:187) at loci.formats.FormatWriter.saveBytes(FormatWriter.java:136) at loci.formats.ImageWriter.saveBytes(ImageWriter.java:205) at loci.formats.tools.ImageConverter.convertPlane(ImageConverter.java:551) at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:487) at loci.formats.tools.ImageConverter.main(ImageConverter.java:681)" task closed minor 5.1.0 General 5.0.0 fixed 0