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Task #12237 (new)

Opened 5 years ago

Last modified 22 months ago

Bug: LIFReader: Original metadata regression from 4.4

Reported by: rleigh Owned by: jburel
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: 5.0.0
Keywords: LIFReader our-fault Cc: pierre.pouchin@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See: https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7503

Reproducible with: leica-lif/chris/free edge 6.lif

Several original metadata keys in 4.4 are squashed to a single key in 5.x. This looks like it's due to the switch to using addSeriesMetadataList; looks like some keys end up using addSeriesMetadata when they should be using addSeriesMetadataList. Looks like a single conditional at fault, but not sure at first glance how to best adjust it to restore the previous behaviour.

Change History (10)

comment:1 Changed 5 years ago by rleigh

  • Component changed from General to Bio-Formats
  • Owner set to mlinkert

comment:2 Changed 5 years ago by jburel

  • Keywords LIFReader our-fault added

comment:3 Changed 5 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:4 Changed 5 years ago by jburel

  • Owner changed from mlinkert to jburel

To be discussed with Roger, I have fixed issue reported in #12741 + some encoding problem noticed.

comment:5 Changed 5 years ago by jburel

  • Milestone changed from 5.1.1 to 5.1.2

Pushing to 5.1.2

comment:6 Changed 4 years ago by jamoore

  • Milestone changed from 5.1.4 to B-F-5.1.4

Splitting 5.1.4 due to milestone decoupling

comment:7 Changed 4 years ago by sbesson

  • Milestone changed from B-F-5.1.4 to BF-5.1.5

comment:8 Changed 4 years ago by mlinkert

See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2016-January/005805.html and file in inbox/leica-lif/ for an example that exhibits the Laser Line issue.

comment:9 Changed 3 years ago by sbesson

  • Milestone changed from B-F-5.2.0 to Unscheduled

comment:10 Changed 22 months ago by sbesson

See also https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=8422 and QA 18854 for another report of this issue.

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