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Task #12257 (new)

Opened 10 years ago

Last modified 9 years ago

netCDF cannot open certain large .ims files

Reported by: mlinkert Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 5.0.1
Keywords: ImarisHDFReader, hdf, netcdf Cc: l.maier@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See QA 9217 and ​http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-May/004407.html. Attempting to read the file throws an IllegalArgumentException? during setId, which is coming from deep within NetcdfFile?.open. This is a > 1GB file, but e have successfully opened larger .ims files so size alone is likely not the issue.

libhdf5 seems to read the file correctly - at least, 'h5ls' and 'h5dump' show more or less what I would expect.

Change History (1)

comment:1 Changed 9 years ago by mlinkert

  • Owner mlinkert deleted

See follow-up on parent ticket: ​https://trac.openmicroscopy.org/ome/ticket/9651#comment:1

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