Bug: MIPAV importer plugin broken due to model changes

[rleigh]

PlugInBioFormatsImporter?.java will not compile:

labtop:plugins pascal$ javac -cp /Applications/mipav:/Applications/mipav/bioformats_package.jar PlugInBioFormatsImporter.java

PlugInBioFormatsImporter.java:201: cannot find symbol
symbol  : method getDimensionsPhysicalSizeX(int,int)
location: interface loci.formats.meta.IMetadata
          Float dimPhysSizeX = store.getDimensionsPhysicalSizeX(0, 0);

PlugInBioFormatsImporter.java:202: cannot find symbol
symbol  : method getDimensionsPhysicalSizeY(int,int)
location: interface loci.formats.meta.IMetadata
          Float dimPhysSizeY = store.getDimensionsPhysicalSizeY(0, 0);

PlugInBioFormatsImporter.java:203: cannot find symbol
symbol  : method getDimensionsPhysicalSizeZ(int,int)
location: interface loci.formats.meta.IMetadata
          Float dimPhysSizeZ = store.getDimensionsPhysicalSizeZ(0, 0);

PlugInBioFormatsImporter.java:204: cannot find symbol
symbol  : method getDimensionsTimeIncrement(int,int)
location: interface loci.formats.meta.IMetadata
          Float dimTimeInc = store.getDimensionsTimeIncrement(0, 0);

4 errors

The method calls in question were removed from the OME data model in 2010, and so it has been non-functional for some time.

Fixing the above error is simple (change getDimensions to getPixels and drop the pixel index). However, there may be additional problems with the code.

Ideally, there should be a maven pom to allow this to be added to our regular CI infrastructure to pick up any future breakage.

[mlinkert]

PR opened to resolve compile errors and add the plugin to the build: ​https://github.com/openmicroscopy/bioformats/pull/1532

[Melissa Linkert <melissa@…>]

(In [580655fa8c2a43edcfd1692a32ffca084cbe101d/bioformats.git] on branch develop) Add MIPAV stub component

See #12420. The licensing and download terms for MIPAV are such that
deploying it to Artifactory is at best questionable. To facilitate
compile testing, this instead adds stubs of the classes needed by the MIPAV
plugin.