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Task #12437 (closed)

Opened 5 years ago

Closed 5 years ago

BUG: ROI analyser uncaught exception - OutOfMemoryError: Java heap space

Reported by: rkferguson Owned by: jburel
Priority: major Milestone: Unscheduled
Component: Insight Version: 5.1.0-m0
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Testing https://github.com/openmicroscopy/openmicroscopy/pull/2725 using OMERO.insight-5.1.0-m0.3-1170-e1aeadc-ice35-b209-mac trout user-3 read-annotate-1

Insight memory set to 64MB - see screenshot 1.

Drew square and propagated through all 29 Z-sections.

When clicked "Add selected" error dialog as expected, but then a crash error dialog behind - see screenshot 2.

java.lang.Exception: Abnormal termination due to an uncaught exception.
java.lang.OutOfMemoryError: Java heap space
     at java.security.AccessController.getStackAccessControlContext(Native Method)
     at java.security.AccessController.getContext(AccessController.java:487)
     at java.awt.AWTEvent.<init>(AWTEvent.java:91)
     at java.awt.event.ActionEvent.<init>(ActionEvent.java:181)
     at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
     at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
     at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
     at java.awt.EventQueue.access$400(EventQueue.java:82)
     at java.awt.EventQueue$2.run(EventQueue.java:676)
     at java.awt.EventQueue$2.run(EventQueue.java:674)
     at java.security.AccessController.doPrivileged(Native Method)
     at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
     at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Abnormal termination due to an uncaught exception.
java.lang.OutOfMemoryError: Java heap space
     at java.security.AccessController.getStackAccessControlContext(Native Method)
     at java.security.AccessController.getContext(AccessController.java:487)
     at java.awt.AWTEvent.<init>(AWTEvent.java:91)
     at java.awt.event.ActionEvent.<init>(ActionEvent.java:181)
     at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
     at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
     at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
     at java.awt.EventQueue.access$400(EventQueue.java:82)
     at java.awt.EventQueue$2.run(EventQueue.java:676)
     at java.awt.EventQueue$2.run(EventQueue.java:674)
     at java.security.AccessController.doPrivileged(Native Method)
     at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
     at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
Exception in thread "AWT-EventQueue-0"

     at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:191)
     at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:291)
     at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:147)
     at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
     at org.openmicroscopy.shoola.env.AWTExceptionHanlder.handle(AWTExceptionHanlder.java:99)
     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
     at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
     at java.lang.reflect.Method.invoke(Method.java:597)
     at java.awt.EventDispatchThread.handleException(EventDispatchThread.java:412)
     at java.awt.EventDispatchThread.processException(EventDispatchThread.java:318)
     at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:312)
     at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
     at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
     at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
     at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

Attachments (2)

Info.plist.jpg (90.8 KB) - added by rkferguson 5 years ago.
OMERO.insight.jpg (267.3 KB) - added by rkferguson 5 years ago.

Download all attachments as: .zip

Change History (3)

Changed 5 years ago by rkferguson

Changed 5 years ago by rkferguson

comment:1 Changed 5 years ago by rkferguson

  • Resolution set to invalid
  • Status changed from new to closed

Fix was not in merge build! - closing as invalid.

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