Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #12585 (closed)

Opened 7 years ago

Closed 6 years ago

Last modified 6 years ago

Bug: GSD Leica .lif files have incorrect series counts and offsets

Reported by: mlinkert Owned by: mlinkert
Priority: major Milestone: 5.1.2
Component: Bio-Formats Version: 5.0.5
Keywords: n.a. Cc: ian.dobbie@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-September/004786.html and file in leica-lif/ian. I can confirm that the larger series look incorrect with current develop branch; this will need to be checked carefully against LAS AF Lite (which hopefully can open the GSD files correctly).

Change History (4)

comment:1 Changed 6 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:2 Changed 6 years ago by mlinkert

  • Milestone changed from 5.1.1 to 5.1.2

This is in progress, but I'm not yet confident enough to include it for 5.1.1.

comment:3 Changed 6 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

comment:4 Changed 6 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0

(In [f675a0abba02e17f50ba626ed8bc57d26dcab624/bioformats.git] on branch develop) Leica LIF: fix handling of files with GSD data

Fixes #12585.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.67000 sec.)

We're Hiring!