Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #12673 (closed)

Opened 9 years ago

Closed 9 years ago

Last modified 9 years ago

CZI image order incorrect.

Reported by: ejrozbicki Owned by: mlinkert
Priority: minor Milestone: 5.1.1
Component: Bio-Formats Version: 5.1.0-m1
Keywords: n.a. Cc: sebrhode@…, l.maier@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

As reported here: http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-November/004912.html
ZEN's S-Index (Scene) and M-Index (Tile) order in not preserved in Bioformats.

For the example file: QA10379:

Image1: S=0 M=0
Image2: S=0 M=1
Image3: S=1 M=0
Image4: S=1 M=1

but opening with Bioformats results in:

Image1: S=0 M=0
Image2: S=1 M=0
Image3: S=0 M=1
Image4: S=1 M=1

Change History (6)

comment:1 Changed 9 years ago by ejrozbicki

  • Type changed from Bug to Task

comment:2 Changed 9 years ago by ejrozbicki

  • Component set to Bio-Formats
  • Milestone set to Unscheduled
  • Owner set to mlinkert
  • Version set to 5.1.0-m1

comment:3 Changed 9 years ago by ejrozbicki

  • Cc l.maier@… added

comment:4 Changed 9 years ago by mlinkert

  • Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:5 Changed 9 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

comment:6 Changed 9 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0

(In [94c93d5339411fd1f63892552fdc471781df4154/bioformats.git] on branch develop) Zeiss CZI: avoid reordering series

Fixes #12673.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.80938 sec.)

We're Hiring!