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Task #12731 (new)

Opened 5 years ago

Last modified 4 years ago

Update L2DReader to support Li-Cor Odyssey data

Reported by: omero-qa Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 5.0.8
Keywords: L2DReader, external, new-format Cc: dshumake@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

https://www.openmicroscopy.org/qa2/qa2/qa/feedback/10471/

Comment: Licor Odyssey file and viewer so the captured images can be used by Omero.

Odyssey data is similar to the older .l2d format, so it is likely possible to use the same reader with minimal changes. See several example datasets in QA 10471.

Change History (2)

comment:1 Changed 5 years ago by mlinkert

  • Component changed from from QA to Bio-Formats
  • Keywords L2DReader external added
  • Priority changed from minor to major

comment:2 Changed 4 years ago by mlinkert

  • Keywords new-format added
  • Owner mlinkert deleted

Note that datasets in this format are a single *_acq.txt file containing INI-style metadata plus one or more similarly-named TIFF files - there is no hierarchical folder structure as in the old .l2d format. A new reader may be cleaner on second thought, but given that we already have parsers for TIFF and INI this would be a good first/easy reader.

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