Task #12789 (closed)
BUG: BioFormats cannot open CZI that was stiched and fused inside ZEN
| Reported by: | bramalingam | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | 5.1.1 |
| Component: | Bio-Formats | Version: | 5.0.8 |
| Keywords: | n.a. | Cc: | sebrhode@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
ref : http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-March/005109.html
1) Tested the file on 5.0.8 and Develop (ImageJ), with stitch tiles option selected in the bioformats importer. Both the builds were able to stitch and open the *_stitched.czi.
2) The other *_stitched_fused.czi opened on the develop build and had the weird pixel data/tile organization, but on 5.0.8 (the image did not even open),and threw the following exception ,
java.lang.IllegalArgumentException?: Invalid array size: 0 x 0 x 1 x 2
at loci.common.DataTools?.safeMultiply32(DataTools?.java:849)
at loci.common.DataTools?.allocate(DataTools?.java:828)....
Change History (3)
comment:1 Changed 9 years ago by mlinkert
- Milestone changed from 5.1.0 to 5.1.1
comment:2 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:3 Changed 9 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [13ca1ea655f5cab00217d0d393af60cc6f51840b/bioformats.git] on branch develop) Zeiss CZI: fix series count for fused images
Fixes #12789
Fixed with: https://github.com/openmicroscopy/bioformats/pull/1725