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Task #12849 (closed)

Opened 9 years ago

Closed 9 years ago

BUG: Error after IJ saving sequence

Reported by:	pwalczysko AND QA	Owned by:	jburel
Priority:	critical	Milestone:	5.1.2
Component:	Insight	Version:	5.1.0
Keywords:	ImageJ plugin	Cc:	ux@…, CJW@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description (last modified by pwalczysko)

Error in Fiji occurs when Save to OMERO is followed by Upload and Save to OMERO on the same image.

Worklflow:

Take 5.1.1rc1 insight-ij plugin and put it to Fiji Plugin folder
Take bioformats-plugins.jar from 5.1.1rc1 release and put it inot the Plugin folder of Fiji
start Fiji, Connect to OMERO as user-4 to trout
Open an image (does not have to have any ROIs) from OMERO to Fiji
use "Upload and Save to OMERO" command
click "Add to Queue"
observe error in Fiji (in Console)

Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
	at org.openmicroscopy.shoola.agents.fsimporter.chooser.FileSelectionTable.allowAddToQueue(FileSelectionTable.java:406)
	at org.openmicroscopy.shoola.agents.fsimporter.chooser.FileSelectionTable.addFiles(FileSelectionTable.java:581)
	at org.openmicroscopy.shoola.agents.fsimporter.chooser.ImportDialog.addImageJFiles(ImportDialog.java:1608)
	at org.openmicroscopy.shoola.agents.fsimporter.chooser.ImportDialog.propertyChange(ImportDialog.java:1671)
	at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:339)
	at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:276)
	at java.awt.Component.firePropertyChange(Component.java:8287)
	at org.openmicroscopy.shoola.agents.fsimporter.chooser.LocationDialog.actionPerformed(LocationDialog.java:950)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
	at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
	at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
	at java.awt.Component.processMouseEvent(Component.java:6414)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)
	at java.awt.Component.processEvent(Component.java:6179)
	at java.awt.Container.processEvent(Container.java:2084)
	at java.awt.Component.dispatchEventImpl(Component.java:4776)
	at java.awt.Container.dispatchEventImpl(Container.java:2142)
	at java.awt.Component.dispatchEvent(Component.java:4604)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4618)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4209)
	at java.awt.Container.dispatchEventImpl(Container.java:2128)
	at java.awt.Window.dispatchEventImpl(Window.java:2492)
	at java.awt.Component.dispatchEvent(Component.java:4604)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:717)
	at java.awt.EventQueue.access$400(EventQueue.java:82)
	at java.awt.EventQueue$2.run(EventQueue.java:676)
	at java.awt.EventQueue$2.run(EventQueue.java:674)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:690)
	at java.awt.EventQueue$3.run(EventQueue.java:688)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

References

Change History (7)

comment:1 Changed 9 years ago by pwalczysko

Cc ux@… added; u removed

comment:2 Changed 9 years ago by pwalczysko

Description modified (diff)

comment:3 Changed 9 years ago by pwalczysko

Note also the QA feedback http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-April/005306.html

the failure occurs also in case the "Sample" images of Fiji (like "blobs") are opened and the import to OMERO is attempted.

comment:4 Changed 9 years ago by pwalczysko

Priority changed from major to critical
Reporter changed from pwalczysko to pwalczysko AND QA

comment:5 Changed 9 years ago by pwalczysko

Cc CJW@… added

comment:6 Changed 9 years ago by pwalczysko

Note that for Mitosis and Lena images from the Sample images the failure does not occur at "Add to the Queue" stage, but the import fails immediately after start (with Failed button) - no error available though when the Failed submenu is expanded.

comment:7 Changed 9 years ago by jburel

Resolution set to fixed
Status changed from new to closed

see https://github.com/openmicroscopy/openmicroscopy/pull/3766

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