Task #12913 (closed)
Opened 9 years ago
Closed 9 years ago
DeltaVision to include Structured Illumination files
| Reported by: | wmoore | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | critical | Milestone: | 5.1.3 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | kai.schleicher@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
From ome-devel e-mails (5th June 2015)...
Is it possible to automatically attach a *.txt file of the same name as the image file to the image during upload?
The files are beeing created on a DeltaVision? OMX Blaze in SI mode for super resolution using the OMX software on a windows machine.
Using Softworx, the super-resolution image is reconstructed from the raw data and then the different channels are aligned.
With this procedure, I end up with several files, for example:
20150601_Beadswell4_4ch_1516_SI_001.dv 20150601_Beadswell4_4ch_1516_SI_001.log 20150601_Beadswell4_4ch_1516_SI_001_SIR.dv 20150601_Beadswell4_4ch_1516_SI_001_SIR_ALX.dv 20150601_Beadswell4_4ch_1516_SI_001_SIR_ALX_log.txt 20150601_Beadswell4_4ch_1516_SI_001_SIR_log.txt 20150601_Beadswell4_4ch_1516_SI_001_task.sh.joblog
here, SIR = reconstructed image, and
ALX= camera alignment done
Change History (3)
comment:1 Changed 9 years ago by wmoore
- Owner set to mlinkert
comment:2 Changed 9 years ago by wmoore
- Cc kai.schleicher@… added
comment:3 Changed 9 years ago by mlinkert
- Resolution set to worksforme
- Status changed from new to closed
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This works as expected for me with current merge builds. I used test_images_good/dv/mt1_R3D_D3D* to test; the .dv file was copied to each of the 3 .dv names listed above, and the _log.txt file was copied to each of the .log and _log.txt files above (so 3 pairs total).
'showinf' on each of the .dv files results in 2 used files - the .dv and the corresponding .log or _log.txt. The extensions mentioned in http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-June/003332.html are only relevant for picking a file to import/initialize; what actually associates log files with a .dv is https://github.com/openmicroscopy/bioformats/blob/develop/components/formats-gpl/src/loci/formats/in/DeltavisionReader.java#L927.
Will, feel free to re-open if you were able to reproduce this, or if I'm missing something.