Task #12940 (closed)
BUG: Reading tif dimensions
| Reported by: | bramalingam | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | 5.1.3 |
| Component: | Bio-Formats | Version: | 5.1.2 |
| Keywords: | MetamorphTiffReader | Cc: | benjaminmwhitlock@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
ref : http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-June/005454.html
QA : https://www.openmicroscopy.org/qa2/qa/feedback/11135/
Results from ImageJ (file-->open) independent of bioformats :
Title: lamp1_phluorin_4_488_1a5down.tif
Width: 1004 pixels
Height: 1002 pixels
Depth: 61 pixels
Voxel size: 1x1x1 pixel
ID: -7
Coordinate origin: 0,0,0
Bits per pixel: 16 (unsigned)
Display range: 337 - 726
Image: 1/61
No Threshold
Uncalibrated
Path: /Volumes/ome/apache_repo/11135/lamp1_phluorin_4_488_1a5down.tif
No Selection
15:34 Title: lamp1_phluorin_4_488.tif
Width: 1004 pixels
Height: 1002 pixels
Depth: 61 pixels
Voxel size: 1x1x1 pixel
ID: -5
Coordinate origin: 0,0,0
Bits per pixel: 16 (unsigned)
Display range: 349 - 743
Image: 1/61
No Threshold
Uncalibrated
Path: /Volumes/ome/apache_repo/11135/lamp1_phluorin_4_488.tif
No Selection
Results from ImageJ (opened using bio-formats) :
Series 0 Name 488
SizeC 1
SizeT 1
SizeX 1004
SizeY 1002
SizeZ 31
Series 0 Name 488_1a5down
SizeC 1
SizeT 2
SizeX 1004
SizeY 1002
SizeZ 30
Results from Matlab reproduce the imageJ results when opened with bio-formats.
Change History (3)
comment:1 Changed 9 years ago by mlinkert
- Keywords MetamorphTiffReader added
- Milestone changed from Unscheduled to 5.1.3
comment:2 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:3 Changed 9 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [077406a0c894660861817b46961391c6832ed00e/bioformats.git] on branch develop) Metamorph TIFF: better check for dimension consistency
This should do a better job of ensuring that Z * C * T is equal to the
number of planes.
Fixes #12940.
Fixed with: https://github.com/openmicroscopy/bioformats/pull/1864