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Task #12942 (closed)

Opened 9 years ago

Closed 9 years ago

Last modified 9 years ago

BUG:Units conversion

Reported by: omero-qa Owned by: jburel
Priority: minor Milestone: 5.1.3
Component: from QA Version: 5.1.2
Keywords: n.a. Cc: caterina.strambio@…, nicholas.vecchietti@…, jamoore, dlindner
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

​https://www.openmicroscopy.org/qa2/qa2/qa/feedback/11140/

Comment: Just upladed an image from a remote server.
The image was a 3 colors/1 plane/1time tif file created in FiJi?.
The image is imported but insight crashes when attempting to access the dataset containing the image in question

java.lang.Exception: Abnormal termination due to an uncaught exception.
java.lang.NullPointerException
	at omero.model.LengthI.<init>(LengthI.java:1442)
	at omero.model.LengthI.<init>(LengthI.java:1467)
	at pojos.PixelsData.getPixelSizeX(PixelsData.java:273)
	at org.openmicroscopy.shoola.agents.util.EditorUtil.transformPixelsData(EditorUtil.java:716)
	at org.openmicroscopy.shoola.agents.util.EditorUtil.formatObjectTooltip(EditorUtil.java:2551)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.formatToolTipFor(TreeViewerTranslator.java:831)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.transformImage(TreeViewerTranslator.java:371)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.transformHierarchy(TreeViewerTranslator.java:400)
	at org.openmicroscopy.shoola.agents.treeviewer.browser.BrowserComponent.setLeaves(BrowserComponent.java:586)
	at org.openmicroscopy.shoola.agents.treeviewer.ExperimenterDataLoader.handleResult(ExperimenterDataLoader.java:255)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:312)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:733)
	at java.awt.EventQueue.access$200(EventQueue.java:103)
	at java.awt.EventQueue$3.run(EventQueue.java:694)
	at java.awt.EventQueue$3.run(EventQueue.java:692)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:703)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
Abnormal termination due to an uncaught exception.
java.lang.NullPointerException
	at omero.model.LengthI.<init>(LengthI.java:1442)
	at omero.model.LengthI.<init>(LengthI.java:1467)
	at pojos.PixelsData.getPixelSizeX(PixelsData.java:273)
	at org.openmicroscopy.shoola.agents.util.EditorUtil.transformPixelsData(EditorUtil.java:716)
	at org.openmicroscopy.shoola.agents.util.EditorUtil.formatObjectTooltip(EditorUtil.java:2551)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.formatToolTipFor(TreeViewerTranslator.java:831)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.transformImage(TreeViewerTranslator.java:371)
	at org.openmicroscopy.shoola.agents.util.browser.TreeViewerTranslator.transformHierarchy(TreeViewerTranslator.java:400)
	at org.openmicroscopy.shoola.agents.treeviewer.browser.BrowserComponent.setLeaves(BrowserComponent.java:586)
	at org.openmicroscopy.shoola.agents.treeviewer.ExperimenterDataLoader.handleResult(ExperimenterDataLoader.java:255)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:312)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:733)
	at java.awt.EventQueue.access$200(EventQueue.java:103)
	at java.awt.EventQueue$3.run(EventQueue.java:694)
	at java.awt.EventQueue$3.run(EventQueue.java:692)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:703)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
Exception in thread "AWT-EventQueue-0"

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:191)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:291)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.doTermination(AbnormalExitHandler.java:147)
	at org.openmicroscopy.shoola.env.AbnormalExitHandler.terminate(AbnormalExitHandler.java:85)
	at org.openmicroscopy.shoola.env.RootThreadGroup.uncaughtException(RootThreadGroup.java:69)
	at java.awt.EventDispatchThread.processException(EventDispatchThread.java:264)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:256)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)

Change History (6)

comment:1 Changed 9 years ago by jburel

  • Cc jamoore dlindner added
  • Summary changed from BUG:Units handling in pojos to BUG:Units conversion

Error in web
0.166700006668 PIXEL cannot be converted to MICROMETER

The error comes the conversion code
Similar to roi
if the value is in pixels we shouldn't attempt to convert

Last edited 9 years ago by jburel (previous) (diff)

comment:2 Changed 9 years ago by dlindner

  • Cc nicholas.vecchietti@… added

Also ​https://www.openmicroscopy.org/qa2/qa/feedback/11142/

comment:3 Changed 9 years ago by jburel

Image imported under user-3
Desktop dataset

comment:4 Changed 9 years ago by wmoore

This same issue is fixed in web at ​https://github.com/openmicroscopy/openmicroscopy/pull/3912

comment:5 Changed 9 years ago by dlindner

  • Resolution set to fixed
  • Status changed from new to closed

Fixed by: ​https://github.com/openmicroscopy/openmicroscopy/pull/3898

comment:6 Changed 9 years ago by jamoore

  • Milestone changed from Unscheduled to 5.1.3
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