Task #12951 (closed)
Opened 4 years ago
Closed 4 years ago
BUG: Metamorph multi-series TIF files grouping
| Reported by: | omero-qa | Owned by: | sbesson |
|---|---|---|---|
| Priority: | minor | Milestone: | 5.1.3 |
| Component: | Bio-Formats | Version: | 5.1.2 |
| Keywords: | n.a. | Cc: | sbesson |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
See https://www.openmicroscopy.org/qa2/qa2/qa/feedback/11154/
With Bio-Formats 5.1.2, running:
showinf -nopix PBS\ only\ .nd
will only list the Brightfield TIFF files.
The relevant logic is likely while incrementing the series index around lines
https://github.com/openmicroscopy/bioformats/blob/v5.1.2/components/formats-gpl/src/loci/formats/in/MetamorphReader.java#L578.
Change History (3)
comment:1 Changed 4 years ago by sbesson
- Owner changed from mlinkert-x to sbesson
comment:2 Changed 4 years ago by sbesson
- Component changed from from QA to Bio-Formats
- Milestone changed from Unscheduled to 5.1.3
comment:3 Changed 4 years ago by sbesson
- Resolution set to fixed
- Status changed from new to closed
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You may also have a look at Agilo extensions to the ticket.
See https://github.com/openmicroscopy/bioformats/pull/1870