Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #13005 (closed)

Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

BUG: Ellipse not visible

Reported by: pwalczysko Owned by: jburel
Priority: major Milestone: OMERO-5.2.0
Component: Insight Version: OMERO-5.1.3
Keywords: n.a. Cc: ux@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

In ImageJ 5.1.3 release BF.

  • open an image from OMERO
  • draw an ellipse on it and add to Overlay
  • Save ROI(s) to OMERO
  • open an Insight and navigate to the image, open it and check ROIs
  • there is one ellipse region listed as expected, but when you click onto the shape, just the border markers are visible in the image, not the ellipse itself.
  • Works fine with rectangle.

Attachments (2)

Screen Shot 2015-08-26 at 15.54.02.png (153.6 KB) - added by pwalczysko 5 years ago.
Screen Shot 2015-08-26 at 15.54.20.png (255.3 KB) - added by pwalczysko 5 years ago.

Download all attachments as: .zip

Change History (10)

Changed 5 years ago by pwalczysko

Changed 5 years ago by pwalczysko

comment:1 Changed 5 years ago by pwalczysko

Note that this seems image specific. The multi-z dv shows the bug. The single-plane tiff DOES NOT show it.

comment:2 Changed 5 years ago by pwalczysko

This is an overlay specific issue. The ROI Manager ellipse workflow works as expected. Also, the mulit-z quiality of the image seems to be important (i.e. multi-z and Overlay shows the bug).

comment:3 Changed 5 years ago by pwalczysko

  • Priority changed from major to minor

comment:4 Changed 5 years ago by jamoore

  • Milestone changed from 5.1.4 to OMERO-5.1.4

Splitting 5.1.4 due to milestone decoupling

comment:5 Changed 5 years ago by jburel

  • Milestone changed from 5.x to OMERO-5.2.0
  • Priority changed from minor to major

Need to check if we can handle cases with no z or no t set in the measurement tool.

comment:6 Changed 5 years ago by jburel

  • Milestone changed from OMERO-5.2.0 to 5.x

Moving to 5.x since this might create unknown issue in MT.
The tool was not designed at the time with such case in mind.

comment:7 Changed 5 years ago by jamoore

  • Milestone changed from 5.x to OMERO-5.2.0
  • Resolution set to duplicate
  • Status changed from new to closed

Since we don't yet have a 5.3/6.0 milestone, I'm migrating this to https://trello.com/c/lNZrNkNE/57-bug-ellipse-not-visible

comment:8 Changed 5 years ago by pwalczysko

As checked today, works with updated Fiji (BF 5.1.7 release 4 Dec) and OMERO-ij plugin from today merge build OMERO.insight-ij-5.2.1-161-7429e47-ice35-b206. The ellipse was checked also from todays merge build of insight, OMERO.insight-5.2.1-161-7429e47-ice35-b206-mac. All works as expected.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.107536 sec.)

We're Hiring!