Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #13057 (closed)

Opened 8 years ago

Closed 7 years ago

RFE: add support for stacks in Gatan reader

Reported by: bramalingam Owned by:
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: Bio-Formats-5.1.3
Keywords: GatanReader, our-fault Cc: andrii@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

ref: http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-October/003480.html

ref_Files: /ome/team/simon/ome-devel/BGal_000438_frames.dm4

Issues reproducible with BF 5.1.4 and 5.1.5.

Change History (7)

comment:1 Changed 8 years ago by mlinkert

  • Milestone changed from B-F-5.1.5 to B-F-5.2.0

comment:2 Changed 8 years ago by mlinkert

  • Keywords GatanReader our-fault added

comment:3 Changed 8 years ago by mlinkert

  • Owner mlinkert deleted

The byte depth issue specifically shouldn't be too difficult to fix, but the larger issue is that this is a stack (see http://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10013/), which we don't currently support for .dm3/.dm4 files. This is more of a new feature than a straight-up bug fix, so pushing out of 5.2.0 would be OK if the Gatan format page is updated to clarify that stacks are not yet supported.

comment:4 Changed 8 years ago by sbesson

  • Owner set to sbesson

comment:5 Changed 8 years ago by sbesson

  • Milestone changed from B-F-5.2.0 to Unscheduled
  • Summary changed from Bug: Gatan Reader (Unsupported byte depth) to RFE: add support for stacks in Gatan reader

Converted into an actionable doc card for 5.2.0 and pushing the RFE to unscheduled.

comment:6 Changed 8 years ago by sbesson

  • Owner sbesson deleted

comment:7 Changed 7 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.64425 sec.)

We're Hiring!