Task #13057 (closed)
Opened 9 years ago
Closed 7 years ago
RFE: add support for stacks in Gatan reader
| Reported by: | bramalingam | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | Bio-Formats-5.1.3 |
| Keywords: | GatanReader, our-fault | Cc: | andrii@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
ref: http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-October/003480.html
ref_Files: /ome/team/simon/ome-devel/BGal_000438_frames.dm4
Issues reproducible with BF 5.1.4 and 5.1.5.
Change History (7)
comment:1 Changed 9 years ago by mlinkert
- Milestone changed from B-F-5.1.5 to B-F-5.2.0
comment:2 Changed 9 years ago by mlinkert
- Keywords GatanReader our-fault added
comment:3 Changed 9 years ago by mlinkert
- Owner mlinkert deleted
comment:4 Changed 9 years ago by sbesson
- Owner set to sbesson
comment:5 Changed 8 years ago by sbesson
- Milestone changed from B-F-5.2.0 to Unscheduled
- Summary changed from Bug: Gatan Reader (Unsupported byte depth) to RFE: add support for stacks in Gatan reader
Converted into an actionable doc card for 5.2.0 and pushing the RFE to unscheduled.
comment:6 Changed 8 years ago by sbesson
- Owner sbesson deleted
comment:7 Changed 7 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
PR open for 5.6.0 consideration: https://github.com/openmicroscopy/bioformats/pull/2904
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The byte depth issue specifically shouldn't be too difficult to fix, but the larger issue is that this is a stack (see http://www.ebi.ac.uk/pdbe/emdb/empiar/entry/10013/), which we don't currently support for .dm3/.dm4 files. This is more of a new feature than a straight-up bug fix, so pushing out of 5.2.0 would be OK if the Gatan format page is updated to clarify that stacks are not yet supported.