Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #13058 (closed)

Opened 9 years ago

Closed 8 years ago

Last modified 8 years ago

BUG: .mrc reader

Reported by: bramalingam Owned by: mlinkert
Priority: minor Milestone: B-F-5.2.0
Component: Bio-Formats Version: Bio-Formats-5.1.3
Keywords: MRCReader, our-fault Cc: andrii@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description (last modified by bramalingam)

ref: QA 16850 , http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-October/003480.html

Tested with BF 5.1.4 and BF 5.1.5:


loci.formats.UnknownFormatException?: Unknown file format: /Volumes/ome/apache_repo/16850/15_movie_gc.mrcs

at loci.formats.ImageReader?.getReader(ImageReader?.java:190)
at loci.plugins.in.ImportProcess?.createBaseReader(ImportProcess?.java:630)
at loci.plugins.in.ImportProcess?.initializeReader(ImportProcess?.java:486)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:139)
at loci.plugins.in.Importer.showDialogs(Importer.java:137)
at loci.plugins.in.Importer.run(Importer.java:75)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:132)
at ij.Executer.run(Executer.java:65)
at java.lang.Thread.run(Thread.java:695)

Change History (4)

comment:1 Changed 9 years ago by bramalingam

  • Description modified (diff)

comment:2 Changed 9 years ago by mlinkert

  • Keywords MRCReader our-fault added

comment:3 Changed 8 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

comment:4 Changed 8 years ago by Melissa Linkert <melissa@…>

  • Remaining Time set to 0

(In [7d675fc68f37be709c1e6d94bb8aa7ec096b0979/bioformats.git] on branch develop) MRC: add .mrcs to list of approved suffixes

Fixes #13058.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.123622 sec.)

We're Hiring!