Task #13059 (closed)
Bug: Spider files (Reader issues)
| Reported by: | bramalingam | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | B-F-5.2.0 |
| Component: | Bio-Formats | Version: | Bio-Formats-5.1.3 |
| Keywords: | SpiderReader, our-fault | Cc: | andrii@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description (last modified by bramalingam)
Ref : http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2015-October/003480.html
http://qa.openmicroscopy.org.uk/qa/feedback/16850/
Tested with BF 5.1.5:
Even after renaming the .dat files to .spi, the following exception was thrown.
Exception:
ImageJ 1.50a; Java 1.6.0_65 [64-bit]; Mac OS X 10.9.5; 13MB of 5000MB (<1%)
java.lang.IllegalArgumentException?: 0 must not be null and positive.
at ome.xml.model.primitives.PositiveInteger?.<init>(PositiveInteger?.java:48)
at loci.formats.MetadataTools?.populatePixelsOnly(MetadataTools?.java:292)
at loci.formats.MetadataTools?.populateMetadata(MetadataTools?.java:255)
at loci.formats.MetadataTools?.populatePixels(MetadataTools?.java:155)
at loci.formats.MetadataTools?.populatePixels(MetadataTools?.java:101)
at loci.formats.in.SpiderReader?.initFile(SpiderReader?.java:255)
at loci.formats.FormatReader?.setId(FormatReader?.java:1426)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:505)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:143)
at loci.plugins.in.Importer.showDialogs(Importer.java:137)
at loci.plugins.in.Importer.run(Importer.java:75)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:212)
at ij.IJ.runPlugIn(IJ.java:176)
at ij.Executer.runCommand(Executer.java:132)
at ij.Executer.run(Executer.java:65)
at java.lang.Thread.run(Thread.java:695)
Change History (4)
comment:1 Changed 9 years ago by bramalingam
- Description modified (diff)
comment:2 Changed 9 years ago by mlinkert
- Keywords SpiderReader added
- Milestone changed from OMERO-5.2.0 to B-F-5.2.0
comment:3 Changed 8 years ago by mlinkert
- Keywords our-fault added
- Resolution set to fixed
- Status changed from new to closed
comment:4 Changed 8 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [cffb831c21fb8fdb20fe25704ff6a4ecec86b537/bioformats.git] on branch develop) Spider: fix reading of big-endian files
Fixes #13059.
Fixed with https://github.com/openmicroscopy/bioformats/pull/2100 (for 5.2.0).