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Task #13084 (new)

Opened 4 years ago

Last modified 4 years ago

BUG: OutOfMemoryError IMetadata.getTaggedObjectsCount()

Reported by: dlindner Owned by: jamoore
Priority: major Milestone: Unscheduled
Component: ApplicationServer Version: OMERO-5.1.3
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

​https://www.openmicroscopy.org/qa2/qa/feedback/16877/ 

java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot count the collection.


	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:855)


	at org.openmicroscopy.shoola.env.data.OMEROGateway.getCollectionCount(OMEROGateway.java:2533)


	at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.getCollectionCount(OmeroDataServiceImpl.java:301)


	at org.openmicroscopy.shoola.env.data.views.calls.ContainerCounterLoader$1.doCall(ContainerCounterLoader.java:121)


	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)


	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)


	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)


	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)


	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)


	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)


	at java.lang.Thread.run(Unknown Source)


Caused by: omero.InternalException


    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (java.lang.OutOfMemoryError):


                        GC overhead limit exceeded


                        "


    serverExceptionClass = "ome.conditions.InternalException"


    message = " Wrapped Exception: (java.lang.OutOfMemoryError):


               GC overhead limit exceeded"


	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)


	at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)


	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)


	at java.lang.reflect.Constructor.newInstance(Unknown Source)


	at java.lang.Class.newInstance(Unknown Source)


	at IceInternal.BasicStream.createUserException(BasicStream.java:2615)


	at IceInternal.BasicStream.access$300(BasicStream.java:12)


	at IceInternal.BasicStream$EncapsDecoder10.throwException(BasicStream.java:3099)


	at IceInternal.BasicStream.throwException(BasicStream.java:2077)


	at IceInternal.Outgoing.throwUserException(Outgoing.java:538)


	at omero.api._IMetadataDelM.getTaggedObjectsCount(_IMetadataDelM.java:165)


	at omero.api.IMetadataPrxHelper.getTaggedObjectsCount(IMetadataPrxHelper.java:416)


	at omero.api.IMetadataPrxHelper.getTaggedObjectsCount(IMetadataPrxHelper.java:388)


	at org.openmicroscopy.shoola.env.data.OMEROGateway.getCollectionCount(OMEROGateway.java:2526)


	... 9 more


	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:191)


	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:291)


	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:259)


	at org.openmicroscopy.shoola.agents.treeviewer.DataBrowserLoader.handleException(DataBrowserLoader.java:148)


	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)


	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)


	at java.awt.event.InvocationEvent.dispatch(Unknown Source)


	at java.awt.EventQueue.dispatchEventImpl(Unknown Source)


	at java.awt.EventQueue.access$500(Unknown Source)


	at java.awt.EventQueue$3.run(Unknown Source)


	at java.awt.EventQueue$3.run(Unknown Source)


	at java.security.AccessController.doPrivileged(Native Method)


	at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source)


	at java.awt.EventQueue.dispatchEvent(Unknown Source)


	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)


	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)


	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)


	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)


	at java.awt.EventDispatchThread.run(Unknown Source)

Change History (3)

comment:1 Changed 4 years ago by jamoore

  • Milestone changed from Unscheduled to OMERO-5.2.1

comment:2 Changed 4 years ago by jburel

  • Milestone changed from OMERO-5.2.1 to OMERO-5.2.2

Milestone OMERO-5.2.1 deleted

comment:3 Changed 4 years ago by jburel

  • Milestone changed from OMERO-5.2.2 to OMERO-5.2.1

Milestone OMERO-5.2.2 deleted

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