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Task #13094 (closed)

Opened 8 years ago

Closed 7 years ago

Bug: BioRadGel file throws FormatException

Reported by:	sbesson	Owned by:
Priority:	minor	Milestone:	Unscheduled
Component:	Bio-Formats	Version:	BIo-Formats-5.1.5
Keywords:	BioRadGelReader	Cc:
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

See QA 16880. With BIo-Formats 5.1.5, this results in the following exception:

./bftools5.1.5/showinf -nopix /ome/apache_repo/16880/c-src\ v7.1sc 
Checking file format [Bio-Rad GEL]
Initializing reader
BioRadGelReader initializing /ome/apache_repo/16880/c-src v7.1sc
Exception in thread "main" loci.formats.FormatException: Unsupported byte depth: 0
	at loci.formats.FormatTools.pixelTypeFromBytes(FormatTools.java:883)
	at loci.formats.in.BioRadGelReader.initFile(BioRadGelReader.java:214)
	at loci.formats.FormatReader.setId(FormatReader.java:1426)
	at loci.formats.ImageReader.setId(ImageReader.java:835)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:651)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1028)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1117)

References

Change History (3)

comment:1 Changed 8 years ago by sbesson

Version changed from Bio-Formats-5.1.3 to BIo-Formats-5.1.5

comment:2 Changed 8 years ago by mlinkert

Owner mlinkert deleted

comment:3 Changed 7 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

PR open: https://github.com/openmicroscopy/bioformats/pull/2878

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