Task #13098 (new)
Opened 8 years ago
Last modified 8 years ago
BUG: JPEG Reader (Could not determine subsample type)
| Reported by: | bramalingam | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | BIo-Formats-5.1.5 |
| Keywords: | turbojpeg, JPEGReader | Cc: | a.ostrowski@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
ref: QA16891 - QA16894
loci.formats.cache.CacheException: java.io.IOException: tjDecompressHeader2(): Could not determine subsampling type for JPEG image at loci.plugins.util.ImageProcessorSource.getObject(ImageProcessorSource.java:78) at loci.formats.cache.Cache.recache(Cache.java:204) at loci.formats.cache.Cache.recache(Cache.java:224) at loci.formats.cache.Cache.<init>(Cache.java:88) at loci.plugins.util.BFVirtualStack.<init>(BFVirtualStack.java:126) at loci.plugins.in.ImagePlusReader.createVirtualStack(ImagePlusReader.java:331) at loci.plugins.in.ImagePlusReader.readImage(ImagePlusReader.java:276) at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:238) at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:216) at loci.plugins.in.ImagePlusReader.openImagePlus(ImagePlusReader.java:111) at loci.plugins.in.Importer.readPixels(Importer.java:146) at loci.plugins.in.Importer.run(Importer.java:85) at loci.plugins.LociImporter.run(LociImporter.java:78) at ij.IJ.runUserPlugIn(IJ.java:212) at ij.IJ.runPlugIn(IJ.java:176) at ij.Executer.runCommand(Executer.java:132) at ij.Executer.run(Executer.java:65) at java.lang.Thread.run(Thread.java:745) Caused by: java.io.IOException: tjDecompressHeader2(): Could not determine subsampling type for JPEG image at loci.formats.services.JPEGTurboServiceImpl.getTile(JPEGTurboServiceImpl.java:332) at loci.formats.services.JPEGTurboServiceImpl.getTile(JPEGTurboServiceImpl.java:238) at loci.formats.in.TileJPEGReader.openBytes(TileJPEGReader.java:85) at loci.formats.DelegateReader.openBytes(DelegateReader.java:225) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:156) at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:148) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:196) at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:157) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:335) at loci.formats.DimensionSwapper.openBytes(DimensionSwapper.java:233) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:335) at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:335) at loci.plugins.util.ImageProcessorReader.openProcessors(ImageProcessorReader.java:186) at loci.plugins.util.ImageProcessorReader.openProcessors(ImageProcessorReader.java:83) at loci.plugins.util.ImageProcessorSource.getObject(ImageProcessorSource.java:72) ... 17 more Caused by: java.lang.Exception: tjDecompressHeader2(): Could not determine subsampling type for JPEG image at org.libjpegturbo.turbojpeg.TJDecompressor.decompressHeader(Native Method) at org.libjpegturbo.turbojpeg.TJDecompressor.setJPEGImage(TJDecompressor.java:113) at org.libjpegturbo.turbojpeg.TJDecompressor.<init>(TJDecompressor.java:82) at loci.formats.services.JPEGTurboServiceImpl.getTile(JPEGTurboServiceImpl.java:324) ... 31 more
Change History (2)
comment:1 Changed 8 years ago by mlinkert
- Keywords turbojpeg JPEGReader added
- Owner mlinkert deleted
comment:2 Changed 8 years ago by sbesson
- Milestone changed from B-F-5.2.0 to Unscheduled
Turbojpeg will not be upgraded for 5.2.0. Pushing away from this milestone
Note: See
TracTickets for help on using
tickets.
You may also have a look at Agilo extensions to the ticket.
Probably worth seeing if updating components/forks/turbojpeg to be in line with the latest libjpeg-turbo release (see https://github.com/libjpeg-turbo/libjpeg-turbo) helps. Note that ImageMagick? doesn't seem to read these files correctly either (I see all black images), but eog on Linux shows plausible-looking figures with gels (haven't tried on Windows/Mac?).