Task #13123 (new)
Opened 9 years ago
Last modified 8 years ago
Andor/FluoviewReader - Incorrect unit conversion
| Reported by: | dgault | Owned by: | dgault |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | J.Wainwright@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Issue as reported: http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-December/005757.html
Sample files can be found in Qa-16928
For the z positions in this reader we are assuming a hard coded unit and converting to microns.
For Andor tiffs at least this conversion appears to be incorrect as reported.
Ideally we would be able to read the unit of measurement from the file metadata.
Change History (5)
comment:1 Changed 9 years ago by jamoore
- Milestone set to Unscheduled
comment:2 Changed 8 years ago by bramalingam
- Milestone Unscheduled deleted
comment:3 Changed 8 years ago by sbesson
- Milestone set to Unscheduled
comment:4 Changed 8 years ago by sbesson
- Type changed from Bug to Task
comment:5 Changed 8 years ago by sbesson
- Component set to Bio-Formats
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You may also have a look at Agilo extensions to the ticket.
Another reference: https://www.openmicroscopy.org/qa2/qa/feedback/17175/
https://github.com/openmicroscopy/bioformats/issues/2400