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Task #13156 (new)

Opened 3 years ago

Last modified 3 years ago

BUG: export as ome.tiff

Reported by: pwalczysko Owned by:
Priority: critical Milestone: OME-Files
Component: Services Version: OMERO-5.2.0
Keywords: n.a. Cc: ux@…, server@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

on the 5.3 branch, have a server OMERO.server-5.3.0-m0-206-de90591-ice35-b30 and corresponding insight OMERO.insight-5.3.0-m0-206-de90591-ice35-b30-mac.

import test_images_regions/multi_z_t_images/2chZT.lsm
Draw 6 ROIs on it, putting them into 3 folders (some ROIs are propagated, some not). Have one higher folder containing 2 of the abovementioned ROI folders. (done via CLI)

  • in Insight,export this image in Insight as ome.tiff -> works fine, and after reimport the ROIs are present as expected (although without the folders)
  • add two tags to the image, tag1 and tag2 (in Insight)
  • add Map Annotation to the image, two lines of random gibberish (in Insight)

after the Tag and Map Annotation addition, try to export the image as ome.tiff again -> observe that the operation is not going on, the machine (server ran locally) is getting overheated. If Insight is quit, then the fan on the machine goes on, suggesting a server problem (the fan goes silent after bin/omero admin restart)

Change History (3)

comment:1 Changed 3 years ago by jburel

  • Milestone changed from OMERO-5.2.2 to OME-Files

comment:2 Changed 3 years ago by pwalczysko

Cannot repeat this with the same image on the mainline. Although the operation takes long, it seems to conclude successfully (connected to eel, not localhost)

comment:3 Changed 3 years ago by pwalczysko

Note that in the above repetition on the mainline, I could not repeat the sorting of the ROIs into folders, as the ROI folders do not feature on the mainline yet.

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