Task #13217 (closed)
Opened 8 years ago
Closed 7 years ago
Bug: initFile array exception in opening CZI
| Reported by: | mtbcarroll | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | OMERO-5.2.0 |
| Keywords: | ZeissCZIReader | Cc: | bf@…, m.pelekanos@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
$ git log -1
commit eb11d06c363f7f2a60fb63c2a819fce5b9f738dc
Merge: 06da1bf fe73414
Author: Sébastien Besson <seb.besson@gmail.com>
Date: Thu Apr 21 09:03:08 2016 +0100
Merge pull request #2349 from simleo/csv_blocks
Fix csv pattern blocks
$ showinf /tmp/New-08.czi
Checking file format [Zeiss CZI]
Initializing reader
ZeissCZIReader initializing /tmp/New-08.czi
Exception in thread "main" java.lang.IndexOutOfBoundsException: Index: 0, Size: 0
at java.util.ArrayList.rangeCheck(ArrayList.java:635)
at java.util.ArrayList.get(ArrayList.java:411)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:562)
at loci.formats.FormatReader.setId(FormatReader.java:1431)
at loci.formats.ImageReader.setId(ImageReader.java:835)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:651)
at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1034)
at loci.formats.tools.ImageInfo.main(ImageInfo.java:1123)
See https://www.openmicroscopy.org/qa2/qa/feedback/17168/ for the file and original report.
Change History (1)
comment:1 Changed 7 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
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PR open: https://github.com/openmicroscopy/bioformats/pull/2856