Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #13236 (new)

Opened 8 years ago

Last modified 8 years ago

Bug: stack trace in converting to PNG

Reported by: mtbcarroll Owned by: dgault
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: OMERO-5.2.0
Keywords: n.a. Cc: bf@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by mtbcarroll) 

$ cd molecular-imaging/
$ bfconvert -no-upgrade TwoDots.STP /tmp/foo.png
MolecularImagingReader initializing TwoDots.STP
[Molecular Imaging] -> /tmp/foo.png [Animated PNG]
Exception in thread "main" java.lang.IllegalArgumentException
	at java.nio.Buffer.position(Buffer.java:236)
	at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:605)
	at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:451)
	at loci.common.RandomAccessInputStream.skipBytes(RandomAccessInputStream.java:597)
	at loci.formats.out.APNGWriter.setId(APNGWriter.java:191)
	at loci.formats.ImageWriter.setId(ImageWriter.java:433)
	at loci.formats.tools.ImageConverter.testConvert(ImageConverter.java:528)
	at loci.formats.tools.ImageConverter.main(ImageConverter.java:878)

Change History (1)

comment:1 Changed 8 years ago by mtbcarroll

  • Description modified (diff)
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.64922 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!