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Task #13237 (closed)

Opened 8 years ago

Closed 7 years ago

RFE: Laser Metadata not being imported with .dv

Reported by:	rkferguson	Owned by:
Priority:	major	Milestone:	Unscheduled
Component:	Bio-Formats	Version:	OMERO-5.2.0
Keywords:	n.a.	Cc:	jburel
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

Iain Porter imposing .dvs into Nightshade.

Metadata relating to the laser component is in the log file, but is not appearing in the image metadata on OMERO.

For Image ID 4086355 - full log file attached - the following is missing from metadata.

#KEY PK Experiment Designer Keys: Don't Modify
#
#KEY EXPERIMENT_TYPE PK
#KEY LASER_CHANNEL 406
#KEY DURATION 0.100000
#KEY EVENT_REPEATS 5
#KEY EVENT_TIME_MARK END
#KEY EVENT_MOTION_OPTIMIZE POSITION
#KEY EVENT_BLEACH PATTERN
#KEY CHANNEL 0.1000,FITC,FITC,100%
#KEY EX_SHUTTERS 3,EX=T,TRANS=F,LASER=F
#KEY EM_SHUTTERS 1,CCD1=F
#KEY TIME_COURSE_STYLE AUTO
#KEY PRE_EVENT_IMAGES 3
#KEY POST_EVENT_IMAGES 32
#KEY PRE_IMAGE_TIME_INTERVAL 0.500
#KEY EXPECTED_HALFTIME 1.000
#KEY ENTIRE_EXP_REPEATS 1
#KEY EXP_REPEATS_TIMELAPSE 10.000
#
#
--------------------------------------------------------

Experiment Record:
------------------
QLM Bleach Event Points:
  SPOT 45.62 45.39
  SPOT 43.55 42.95
  SPOT 41.49 40.50
  SPOT 39.43 38.06
  SPOT 47.36 47.52

References

Attachments (1)

01_R3D.dv.log (18.2 KB) - added by rkferguson 8 years ago.

Download all attachments as: .zip

Change History (4)

Changed 8 years ago by rkferguson

Attachment 01_R3D.dv.log added

comment:1 Changed 8 years ago by jburel

Cc jburel added
Component changed from Import to Services

comment:2 Changed 8 years ago by jburel

Component changed from Services to Bio-Formats
Priority changed from critical to major
Summary changed from BUG: Laser Metadata not being imported with .dv to RFE: Laser Metadata not being imported with .dv

comment:3 Changed 7 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

PR open: https://github.com/openmicroscopy/bioformats/pull/2974

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