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Task #13239 (closed)

Opened 4 years ago

Closed 3 years ago

BUG: CZI Invalid C Index

Reported by: bramalingam Owned by: bramalingam
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: Bio-Formats-5.1.8
Keywords: n.a. Cc: rac2017@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Ref: QA 17192
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2016-May/006030.html

Testing Results:

File: Conv 2 3 colors.czi

BF : 5.1.9

(Fiji Is Just) ImageJ 2.0.0-rc-43/1.51a; Java 1.8.0_60 [64-bit]; Mac OS X 10.9.5; 53MB of 9837MB (<1%)

java.lang.IllegalArgumentException?: Invalid C index: 1/1

at loci.formats.FormatTools?.getIndex(FormatTools?.java:413)
at loci.formats.FormatTools?.getIndex(FormatTools?.java:340)
at loci.formats.FormatReader?.getIndex(FormatReader?.java:1113)
at loci.formats.in.ZeissCZIReader.assignPlaneIndices(ZeissCZIReader.java:1296)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:773)
at loci.formats.FormatReader?.setId(FormatReader?.java:1426)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:505)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:143)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:216)
at ij.IJ.runPlugIn(IJ.java:180)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)

Change History (3)

comment:1 Changed 3 years ago by dgault

Same issue has again been reported via ome-users - http://lists.openmicroscopy.org.uk/pipermail/ome-users/2016-August/006143.html
Additional QA file can be found for reproducing: QA-17325

comment:3 Changed 3 years ago by bramalingam

  • Resolution set to fixed
  • Status changed from new to closed
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