Task #13262 (closed)
Opened 8 years ago
Closed 2 years ago
RFE: nd2 files with strange characters in metadata
Reported by: | mtbcarroll | Owned by: | dgault |
---|---|---|---|
Priority: | minor | Milestone: | n.a. |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | ND2Reader | Cc: | bf@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
Current showinf (at ad334917) shows various odd metadata for https://www.openmicroscopy.org/qa2/qa/feedback/17260/ including,
Component Count #1: 1 Component Count #2: 1 Component Count #3: 1 Data: i�%���¬����c?�����c�i�%�� Desc: Ti ZDrive Detector: 0
and
bZInverted: false bZPosAbsolute: true baOpticalPathsCorrections: CLxOpticalPathsCorrectionTable�wstrSystemUUID690734c761a342afacf0cc7a68c6577bvecIdsSizematRows��L baScanArea: dZoom.����@dAngle dXOffset��"��~ʿ dYOffset'1�Z�?dScanAreaAspect�?bIsCrop dCropZoom�?dCropXOffsetdCropYOffsetdCropAspect�?uiPointCoint bottom: 0 cx: 1 cy: 1
That dCropZoom bit certainly seems to confuse Insight, as shown in the attached screenshot. (On my desktop I'm using a UTF-8 locale.) It might be nice to better handle this non-ASCII character data.
Attachments (1)
Change History (3)
Changed 8 years ago by mtbcarroll
comment:1 Changed 8 years ago by mlinkert
Screenshots of QA 17260 opened in NIS Elements have been uploaded to data_repo/inbox/qa-17260-investigation/. The excitation wavelengths in particular are missing, when Elements shows that they should be 405.0, 488.0, and 561.0 for each of the 3 channels. I'd assume it's related to what's going on here, as both are indicative of one or more metadata blocks being incorrectly parsed (possibly an incorrect starting offset?).
comment:2 Changed 2 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
Fixed in https://github.com/ome/bioformats/pull/3726, excitation wavelength re-opened in https://github.com/ome/bioformats/issues/3812
metadata confusing Insight