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Task #13296 (new)

Opened 3 years ago

Last modified 3 years ago

BUG: Bio-Formats Exporter issues while splitting Z,T

Reported by: bramalingam Owned by: dgault
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: Bio-Formats-5.1.8
Keywords: n.a. Cc: kai.schleicher@…, nikolaus.ehrenfeuchter@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Was able to reproduce the issue mentioned by the user:

Bio-Formats Version : 5.2.2 (Fiji)

ref: From the user :

The problem appears when I check "write each timepoint to a separate
file" and "write each timepoint to a separate file". Whats printed in
the macro recorder is this:

run("Bio-Formats Exporter", "save=[/home/kai/DATA/Benoit for
Kai/kaistest/test_export_.tif] write_each_timepoint write_each_channel
compression=Uncompressed");

I do get single *.tifs, but channels and timepoints are mixed up. This
becomes clear when you open the resulting images. Channel contains phase
images while channel two should only be fluorescent images.

Change History (2)

comment:1 Changed 3 years ago by sbesson

Is this also reproducible using bfconvert with the appropriate options?

comment:2 Changed 3 years ago by bramalingam

  • Cc nikolaus.ehrenfeuchter@… added
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