Task #13296 (new)
Opened 8 years ago
Last modified 8 years ago
BUG: Bio-Formats Exporter issues while splitting Z,T
| Reported by: | bramalingam | Owned by: | dgault |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | Bio-Formats-5.1.8 |
| Keywords: | n.a. | Cc: | kai.schleicher@…, nikolaus.ehrenfeuchter@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Was able to reproduce the issue mentioned by the user:
Bio-Formats Version : 5.2.2 (Fiji)
ref: From the user :
The problem appears when I check "write each timepoint to a separate
file" and "write each timepoint to a separate file". Whats printed in
the macro recorder is this:
run("Bio-Formats Exporter", "save=[/home/kai/DATA/Benoit for
Kai/kaistest/test_export_.tif] write_each_timepoint write_each_channel
compression=Uncompressed");
I do get single *.tifs, but channels and timepoints are mixed up. This
becomes clear when you open the resulting images. Channel contains phase
images while channel two should only be fluorescent images.
Change History (2)
comment:1 Changed 8 years ago by sbesson
comment:2 Changed 8 years ago by bramalingam
- Cc nikolaus.ehrenfeuchter@… added
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Is this also reproducible using bfconvert with the appropriate options?