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Task #13303 (new)

Opened 3 years ago

Last modified 3 years ago

BUG: ResourceError on large batch uploads

Reported by: dlindner Owned by: dlindner
Priority: major Milestone: Unscheduled
Component: General Version: OMERO-5.1.3
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Not sure if this is an Insight or Server problem.

https://www.openmicroscopy.org/qa2/qa/feedback/17362/

omero.ResourceError
    serverStackTrace = "ome.conditions.ResourceError: Permission denied
                        	at ome.services.RawFileBean.write(RawFileBean.java:483)
                        	at sun.reflect.GeneratedMethodAccessor1089.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:606)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:154)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:218)
                        	at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:202)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:249)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:121)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at com.sun.proxy.$Proxy95.write(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1089.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:606)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:98)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at com.sun.proxy.$Proxy95.write(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1113.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:606)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:149)
                        	at ome.services.blitz.impl.RawFileStoreI.write_async(RawFileStoreI.java:132)
                        	at ome.services.blitz.repo.RepoRawFileStoreI.write_async(RepoRawFileStoreI.java:118)
                        	at sun.reflect.GeneratedMethodAccessor1112.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
                        	at java.lang.reflect.Method.invoke(Method.java:606)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at omero.cmd.CallContext.invoke(CallContext.java:78)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at com.sun.proxy.$Proxy96.write_async(Unknown Source)
                        	at omero.api._RawFileStoreTie.write_async(_RawFileStoreTie.java:108)
                        	at omero.api._RawFileStoreDisp.___write(_RawFileStoreDisp.java:307)
                        	at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:440)
                        	at IceInternal.Incoming.invoke(Incoming.java:222)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2482)
                        	at Ice.ConnectionI.dispatch(ConnectionI.java:1258)
                        	at Ice.ConnectionI.message(ConnectionI.java:1213)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:321)
                        	at IceInternal.ThreadPool.access$300(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:693)
                        	at java.lang.Thread.run(Thread.java:745)
                        "
    serverExceptionClass = "ome.conditions.ResourceError"
    message = "Permission denied"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream.createUserException(BasicStream.java:2615)
	at IceInternal.BasicStream.access$300(BasicStream.java:12)
	at IceInternal.BasicStream$EncapsDecoder10.throwException(BasicStream.java:3099)
	at IceInternal.BasicStream.throwException(BasicStream.java:2077)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:538)
	at omero.api._RawFileStoreDelM.write(_RawFileStoreDelM.java:386)
	at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:1409)
	at omero.api.RawFileStorePrxHelper.write(RawFileStorePrxHelper.java:1381)
	at ome.formats.importer.transfers.UploadFileTransfer.transfer(UploadFileTransfer.java:79)
	at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:430)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageFile(OMEROGateway.java:6708)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1202)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:79)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:104)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:662)


Change History (1)

comment:1 Changed 3 years ago by dlindner

  • Priority changed from minor to major
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