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Task #13306 (new)

Opened 3 years ago

Last modified 11 months ago

RFE: Populate slice labels of ImagePlus Object

Reported by: bramalingam Owned by:
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: 2.5
Keywords: n.a. Cc: michael.ellis@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Change History (5)

comment:1 Changed 3 years ago by bramalingam

  • Summary changed from RFE: Populate slice labels of ImagePlus Object with Channel names to RFE: Populate slice labels of ImagePlus Object

comment:3 Changed 3 years ago by bramalingam

It seems the the ImageJ BioFormats Importer also fails to set the ImageJ pixel size in accordance with the metadata physicalSizeX/YZ parameters.

Unit<Length> unit = UNITS.MICROMETER;
Length physicalSizeX = new Length(1.0, unit);
Length physicalSizeY = new Length(1.5, unit);
Length physicalSizeZ = new Length(2, unit);

comment:4 Changed 3 years ago by dgault

An additional report of this issue has been received on the mailing list: http://lists.openmicroscopy.org.uk/pipermail/ome-users/2017-March/006412.html

In this instance it is an ND2 file with associated TIFF files, the title being displayed in ImageJ remains the same no matter which file is being accessed.

comment:5 Changed 11 months ago by mlinkert

  • Owner bramalingam deleted
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