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Bug #13309 (new)

Opened 3 years ago

Last modified 3 years ago

CellSensReader regression

Reported by: szleo Owned by:
Priority: major Cc: romain.guiet@…
Sprint: n.a.
Total Remaining Time: n.a.

Description

See https://www.openmicroscopy.org/qa2/qa/feedback/17412.

While reading the provided Image_02.vsi dataset, CellSensReader incorrectly sees some series as both multi-C and multi-Z (expected: all multi-C).

I've done some preliminary investigation on this and I have two notes:

  1. Caused by https://github.com/openmicroscopy/bioformats/pull/2267
  2. From the showinf output it looks like the phantom Z-stacks appear only in series where sizeC is different from effectiveSizeC

Change History (2)

comment:1 Changed 3 years ago by dgault

An additional report of this issue was reported via the forum: https://www.openmicroscopy.org/community/posting.php?mode=reply&f=13&t=8253

Associated QA file is QA-17658

Issue has been tested and reproduced with Bio-Formats 5.4.0
Further testing and investigation is required to root cause the problem.

comment:2 Changed 3 years ago by mlinkert

  • Owner mlinkert deleted
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