Bug #13316 (closed)
Opened 7 years ago
Closed 7 years ago
nd2 to tiff conversion issues
| Reported by: | dgault | Owned by: | |
|---|---|---|---|
| Priority: | major | Cc: | dgault |
| Sprint: | n.a. | ||
| Total Remaining Time: | n.a. |
Description
Issue was raised by user in forum thread: https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=8180
Sample file can be found in QA-17475
Using the sample file provided run the following command:
bfconvert -channel 0 field001.nd2 field001.tif
The following Exception is encountered:
Exception in thread "main" java.lang.IllegalArgumentException?: Invalid image index: 24/22
at loci.formats.FormatTools?.getZCTCoords(FormatTools?.java:641)
at loci.formats.FormatTools?.getFilename(FormatTools?.java:1124)
at loci.formats.FormatTools?.getFilename(FormatTools?.java:1101)
at loci.formats.FormatTools?.getFilename(FormatTools?.java:1088)
at testing.BF_ImageConverter.testConvert(BF_ImageConverter.java:553)
at testing.ImageConvertTest?.main(ImageConvertTest?.java:66)
Change History (2)
comment:1 Changed 7 years ago by sbesson
comment:2 Changed 7 years ago by sbesson
- Resolution set to fixed
- Status changed from new to closed
See also https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=8182#p17798 for a more detailed description of the various scenarios.
Note I can reproduce the issue with fake files so this is completely independent of the input file
Doing some minimal bisection, it looks like this regression was introduced between 5.2.1 and 5.2.2, likely as a result of following https://github.com/openmicroscopy/bioformats/issues/2490.