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Bug #13317 (new)

Opened 3 years ago

Zeiss CZI - Unable to open files - IndexOutOfBoundsException

Reported by: dgault Owned by: dgault
Priority: major Cc:
Sprint: n.a.
Total Remaining Time: n.a.

Description

The following issue has been reported via the following ome-users threads:
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2017-January/006321.html
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2017-January/006325.html

The relevant QA files are:
QA-17490
QA-17492

The error message which is reproducible with Bio-Formats 5.2 and 5.3 is as below:
java.lang.IndexOutOfBoundsException?: Index: 0, Size: 0

at java.util.ArrayList?.rangeCheck(ArrayList?.java:653)
at java.util.ArrayList?.get(ArrayList?.java:429)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:633)
at loci.formats.FormatReader?.setId(FormatReader?.java:1399)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:498)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:141)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)

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