Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #13326 (closed)

Opened 7 years ago

Closed 7 years ago

BUG: Zeiss CZI truncated files handling

Reported by: bramalingam Owned by:
Priority: minor Milestone: Unscheduled
Component: Bio-Formats Version: Bio-Formats-5.1.8
Keywords: ZeissCZIReader Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

ref: https://trello.com/c/6aobhHCH/43-zeiss-czi-truncated-file-handling

Tested with Bio-Formats 5.3.3 on Fiji,

Stack trace,
(Fiji Is Just) ImageJ 2.0.0-rc-56/1.51h; Java 1.8.0_60 [64-bit]; Mac OS X 10.11.6; 84MB of 11221MB (<1%)

java.lang.IndexOutOfBoundsException?: Index: 0, Size: 0
at java.util.ArrayList?.rangeCheck(ArrayList?.java:653)
at java.util.ArrayList?.get(ArrayList?.java:429)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:633)
at loci.formats.FormatReader?.setId(FormatReader?.java:1399)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:498)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:141)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)

Change History (1)

comment:1 Changed 7 years ago by mlinkert

  • Keywords ZeissCZIReader added
  • Resolution set to fixed
  • Status changed from new to closed
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.62503 sec.)

We're Hiring!