Task #13326 (closed)
Opened 7 years ago
Closed 7 years ago
BUG: Zeiss CZI truncated files handling
| Reported by: | bramalingam | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | Bio-Formats-5.1.8 |
| Keywords: | ZeissCZIReader | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
ref: https://trello.com/c/6aobhHCH/43-zeiss-czi-truncated-file-handling
Tested with Bio-Formats 5.3.3 on Fiji,
Stack trace,
(Fiji Is Just) ImageJ 2.0.0-rc-56/1.51h; Java 1.8.0_60 [64-bit]; Mac OS X 10.11.6; 84MB of 11221MB (<1%)
java.lang.IndexOutOfBoundsException?: Index: 0, Size: 0
at java.util.ArrayList?.rangeCheck(ArrayList?.java:653)
at java.util.ArrayList?.get(ArrayList?.java:429)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:633)
at loci.formats.FormatReader?.setId(FormatReader?.java:1399)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:498)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:141)
at loci.plugins.in.Importer.showDialogs(Importer.java:140)
at loci.plugins.in.Importer.run(Importer.java:76)
at loci.plugins.LociImporter?.run(LociImporter?.java:78)
at ij.IJ.runUserPlugIn(IJ.java:217)
at ij.IJ.runPlugIn(IJ.java:181)
at ij.Executer.runCommand(Executer.java:137)
at ij.Executer.run(Executer.java:66)
at java.lang.Thread.run(Thread.java:745)
Change History (1)
comment:1 Changed 7 years ago by mlinkert
- Keywords ZeissCZIReader added
- Resolution set to fixed
- Status changed from new to closed
PR open: https://github.com/openmicroscopy/bioformats/pull/2856