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Bug #1503 (closed)

Opened 15 years ago

Closed 15 years ago

OMERO.importer-Beta-4.1.0-DEV-r5161-b2424 errors / bug

Reported by: omero Owned by: bwzloranger
Priority: major Cc: bwzloranger, melissa@…
Sprint: n.a.
Total Remaining Time: n.a.

Description

I wanted to repport 2 issues that I have encountered with the trunk version of OMERO.importer.

1) It seems that when you select multiple file and click add, only a single file is added at a time.

2) WHen trying to import PerkinElmer? .flex file, I get errors for the parsing of the metadta. I have attached the log obtained with 2 Images used.

Attachments (5)

005007000.flex (5.3 MB) - added by omero 15 years ago.
005008000.flex (5.3 MB) - added by omero 15 years ago.
error.log (9.4 KB) - added by omero 15 years ago.
omeroinsight.log (38.5 KB) - added by omero 15 years ago.
Error log for OMERO.insight import
importer.log (30.5 KB) - added by omero 15 years ago.
Importer Error log to import simple JPEG image, which worked under beta4.0.3

Change History (14)

Changed 15 years ago by omero

comment:1 Changed 15 years ago by jmoore

  • Cc melissa@… added

We'll look into the Flex file, but can you tell us which multiple files you are clicking on? If they belong to the same logical import; then they will get grouped together. Could that be happening?

comment:2 Changed 15 years ago by jmoore

  • Milestone changed from Unscheduled to OMERO-Beta4.1
  • Type changed from User Story to defect

Changed 15 years ago by omero

Changed 15 years ago by omero

Changed 15 years ago by omero

Error log for OMERO.insight import

comment:3 Changed 15 years ago by omero

Mellisa,

This problem also occurs with OMERO.insight import.

I will attach the error log for this as well.

What I meant by select multiple file is that even with regular tiff files I get the same problem.

How can I go about loading the flex files other than selecting multiple ones?

Ghislain

comment:4 Changed 15 years ago by jmoore

  • Cc bwzloranger added

Ghislain, I don't see anything in the insight log going wrong. The importer log shows several NPEs which I've listed on #1499. That may be causing the selection errors. What svn version is this?

comment:5 Changed 15 years ago by omero

This is the version:
OMERO.importer-Beta-4.1.0-DEV-r5161-b2424

Same issues for flex import using OMERO.insight
OMERO.insight-r6624-b1041-win

Best,

comment:6 Changed 15 years ago by omero

Actually, I do appear to have issues loading any kind of images. I tried a JPEG image that I was able to import using beta4.0.3 and it fails as well. I have attached the error log for this as well.

Changed 15 years ago by omero

Importer Error log to import simple JPEG image, which worked under beta4.0.3

comment:7 Changed 15 years ago by jmoore

It looks like your server and clients don't match. What server version are you using?

comment:8 Changed 15 years ago by omero

I think you are right. I had asked our IT guy to install from trunk but after talking with him, he said that he installed the release build of Beta4.0.3.

Sorry for this.

comment:9 Changed 15 years ago by bwzloranger

  • Resolution set to fixed
  • Status changed from new to closed

Was able to import these files. Marking this as resolved based on Ghislain's additional comments.

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