Bug #1584 (closed)
Opened 15 years ago
Closed 15 years ago
CSV exception from populate_rois.py
Reported by: | jamoore | Owned by: | cxallan |
---|---|---|---|
Priority: | major | Cc: | |
Sprint: | n.a. | ||
Total Remaining Time: | n.a. |
Description
While populating siRNA:
josh@mac:~/code/omero.git/dist$ PYTHONPATH=lib/python python lib/python/omero/util/populate_roi.py -h localhost -u root 551 Password: Parsing: Well0001_mode1_z000_t000_detail_2008-09-18-10h48m54s.txt Downloading original file: 854 Traceback (most recent call last): File "lib/python/omero/util/populate_roi.py", line 1051, in <module> measurement_ctx.parse_and_populate() File "lib/python/omero/util/populate_roi.py", line 519, in parse_and_populate result = self.parse() File "lib/python/omero/util/populate_roi.py", line 604, in parse rows = list(csv.reader(data, delimiter='\t')) _csv.Error: line contains NULL byte
plate upload was successful, but original file on disk (`/OMERO/Files/854') is empty.
cli log:
2009-10-18 17:03:17,100 798 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 4.0.1 revision: 5610 date: 16 October 2009 2009-10-18 17:03:22,224 5922 [ main] INFO ome.formats.importer.ImportCandidates - 164 file(s) parsed into 1 groups with 25 call(s) to setId in 4733ms. (4756ms total) [24 unknowns] 2009-10-18 17:08:48,119 331817 [ main] INFO ormats.importer.cli.LoggingImportMonitor - IMPORT_DONE Imported pixels: 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 2009-10-18 17:08:48,121 331819 [ main] INFO ome.formats.importer.cli.ErrorHandler - Number of errors: 0
Change History (1)
comment:1 Changed 15 years ago by cxallan
- Resolution set to worksforme
- Status changed from new to closed
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Haven't seen this ever again. Re-open as necessary.