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User Story #1797 (new)

Opened 14 years ago

Last modified 8 years ago

User-specified annotations on Import — at Version 11

Reported by: cxallan Owned by: bwzloranger
Priority: major Milestone: Unscheduled
Component: Import Keywords: n.a.
Cc: fs@…, ux@…, h.perrett@… Story Points: n.a.
Sprint: n.a. Importance: n.a.
Total Remaining Time: n.a. Estimated Remaining Time: n.a.

Description (last modified by wmoore)

The importer should be able to handle user specified annotations, linking them to all images in a given import run.

Admins or Group leaders should be able to specify an annotation "template", like an OMERO.editor file that has to be filled out by users when importing images. This could include 'required' vv optional fields.

http://www.openmicroscopy.org/community/viewtopic.php?f=6&t=753

Would be nice to allow population of OMERO.tables with this data, to support some of the features of Batch Annotation #4271.

Questions:

  • When users import, do you want to give them a choice of templates they fill out?
  • How complex is the template? E.g. Simple list of attributes (like column headers in a table)? Or "fully featured" like OMERO.editor, with a "type" for each parameter (boolean, String, integer etc), options for some fields, default values, "required" vv optional parameters etc.
  • If I'm importing 100 images with 10 fields each, when do I fill these out? E.g. after I hit "Import" (before importing starts), after import is finished (but how to enforce this) or before Import. E.g. Create an Excel table of images (identified by name) and fill out the values, then pick this file on import.

Change History (11)

comment:1 Changed 14 years ago by cxallan

  • Owner changed from bwzloranger to cxallan

comment:2 Changed 14 years ago by cxallan

r6081: Added capability to handle text annotations

comment:3 Changed 14 years ago by cxallan

  • Owner changed from cxallan to bwzloranger

Date/Time?, boolean, long and double annotations should be added to the command line importer.

comment:4 Changed 14 years ago by bwzloranger

  • Milestone changed from OMERO-Beta4.2 to Unscheduled

comment:5 Changed 14 years ago by cxallan

(In [8274]) Added text annotation linkages to the command line importer. (See #1797)

comment:6 Changed 13 years ago by cxallan <cxallan@…>

(In [1208a2da7848b7830b105f82053aec9458a5f849/ome.git]on branches 4_1, dev_4_1, dev_4_1_custom) Added text annotation linkages to the command line importer. (See #1797)

git-svn-id: ​file:///home/svn/omero/branches/Beta4.1@8274 05709c45-44f0-0310-885b-81a1db45b4a6

comment:7 Changed 13 years ago by jmoore <josh@…>

(In [0ed10cb9b92a9fd02ad7c28a2267f1026d3a36d2/ome.git] on branch dev_4_1_custom) Merge remote branch 'origin/dev_4_1' into dev_4_1_custom

Conflicts:

.classpath
components/tools/OmeroImporter/src/ome/formats/importer/ImportLibrary.java
components/tools/OmeroImporter/src/ome/formats/importer/cli/CommandLineImporter.java
etc/omero.properties
lib/repository/bio-formats-9071a01.jar
lib/repository/jai_imageio-9071a01.jar
lib/repository/loci-common-9071a01.jar
lib/repository/mdbtools-java-9071a01.jar
lib/repository/ome-xml-9071a01.jar
lib/repository/poi-loci-9071a01.jar

comment:8 Changed 13 years ago by cxallan <cxallan@…>

(In [1208a2da7848b7830b105f82053aec9458a5f849/ome.git]on branches 4_1, 4_1_custom, dev_4_1, dev_4_1_custom, josh/4.1-web-backport) Added text annotation linkages to the command line importer. (See #1797)

git-svn-id: ​file:///home/svn/omero/branches/Beta4.1@8274 05709c45-44f0-0310-885b-81a1db45b4a6

comment:9 Changed 13 years ago by jmoore <josh@…>

(In [0ed10cb9b92a9fd02ad7c28a2267f1026d3a36d2/ome.git]on branches 4_1_custom, dev_4_1_custom, josh/4.1-web-backport) Merge remote branch 'origin/dev_4_1' into dev_4_1_custom

Conflicts:

.classpath
components/tools/OmeroImporter/src/ome/formats/importer/ImportLibrary.java
components/tools/OmeroImporter/src/ome/formats/importer/cli/CommandLineImporter.java
etc/omero.properties
lib/repository/bio-formats-9071a01.jar
lib/repository/jai_imageio-9071a01.jar
lib/repository/loci-common-9071a01.jar
lib/repository/mdbtools-java-9071a01.jar
lib/repository/ome-xml-9071a01.jar
lib/repository/poi-loci-9071a01.jar

comment:10 Changed 13 years ago by wmoore

  • Cc jburel wmoore added
  • Description modified (diff)
  • Summary changed from Add ability to handle user specified annotations to User-specified annotations on Import

comment:11 Changed 13 years ago by wmoore

  • Description modified (diff)
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