Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
- Timestamp:
-
03/02/10 10:48:01 (14 years ago)
- Author:
-
wmoore
- Comment:
-
Legend:
- Unmodified
- Added
- Removed
- Modified
-
-
Property
Status
changed from
new
to
assigned
-
|
initial
|
v2
|
|
| 2 | 2 | |
| 3 | 3 | This code may be based on the {{{e2proc2d.py}}} script described here http://blake.bcm.edu/emanwiki/Eman2DataStorage |
| | 4 | |
| | 5 | Command usage: |
| | 6 | |
| | 7 | {{{ |
| | 8 | |
| | 9 | wjm:EMAN-export will$ e2proc3d.py bdb:/Users/will/Documents/EM-data/EMAN2-tutorial/eman_demo/raw_data/particles#1160_ptcls particles.mrc |
| | 10 | the images are 2D - I will now make a 3D image out of the 2D images |
| | 11 | 331 images, processing 0-330...... |
| | 12 | wjm:EMAN-export will$ e2proc2d.py bdb:/Users/will/Documents/EM-data/EMAN2-tutorial/eman_demo/raw_data/particles#1160_ptcls particles2d.spi |
| | 13 | 331 images, processing 0-330 |
| | 14 | 331 images |
| | 15 | wjm:EMAN-export will$ |
| | 16 | |
| | 17 | }}} |
| | 18 | |
| | 19 | Both these command above output all the image planes in the 1160_ptcls bdb into a single image. |
| | 20 | |
| | 21 | NB. If you use e2proc2d.py command and specify output as particles.mrc, then you only get a single plane, since mrc is considered a 3d format (need e2proc3d.py). But spi is considered a stack of 2d planes, so it is OK to use the e2proc2d.py to put multiple planes in this format! |
1.3.13-PRO © 2008-2011
Agilo Software all
rights reserved
(this page was served in: 0.12020 sec.)
