Requirement #1917 (closed)
Opened 9 years ago
Closed 5 years ago
Electron Microscopy Preview support
| Reported by: | wmoore | Owned by: | wmoore |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | General | Keywords: | EM, schema |
| Cc: | jburel, ajpatterson | Business Value: | n.a. |
| Total Story Points: | n.a. | Roif: | n.a. |
| Mandatory Story Points: | n.a. |
Description (last modified by jburel)
This is the central place to document insight#1738 the requirements and tickets for support of EM in OMERO.
At this stage, we are investigating various ways to support EM work in OMERO. Some of this work may result in Preview features for the 4.2 release.
Usage
It is intended that OMERO can be used as a data repository for EM images, in particular for use in a Single Particle Analysis workflow. Most of the functionality will initially be developed as Python scripts (client scripts OR scripting service scripts) run from the command line.
Breakdown
- Allow to support open EM images saved in OMERO using external applications. (see ExternalApplication)
- Support for more EM formats. Spider and Imagic.
- insight#1737 Viewer for 3D volumes
- Model changes for key EM metadata #3677
- Need to describe processing work-flows, from raw images to single-particle EM-map. This will build on Image-Image links insight#1650
- insight#1739 Investigate interaction between OMERO and Single-Particle software
- #1836 Block based importing to get 4K x 4K and larger images imported successfully
- #1837 Export of Images in EM formats: (Act 1 day) DONE
- #1844 CTF correction via EMAN2
- #1846 Upload an EMAN2 bdb folder of images to OMERO: (Act 1 day) DONE
Change History (3)
comment:1 Changed 8 years ago by jburel
- Cc jburel ajpatterson added
- Component set to General
- Description modified (diff)
- Priority set to minor
comment:2 Changed 7 years ago by ajpatterson
- Keywords schema added
comment:3 Changed 5 years ago by wmoore
- Resolution set to fixed
- Status changed from new to closed