Task #1984 (closed)
Opened 9 years ago
Closed 9 years ago
FLIM: Visualisation
| Reported by: | dzmacdonald | Owned by: | jburel |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | jburel |
| Resources: | n.a. | Referenced By: | 1970 |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2010-12-09 (1) |
Description (last modified by dzmacdonald)
OMERO Workflows
- In OMERO the user should be able to draw the ROI in different regions on the image
- select the fret, no fret images
- Run analysis
- Generate the Heatmaps and upload/attach in OMERO
- Generate the summary results
- Allow the visualisation of the chi value to see how good the fits are.
- Allow thresholding on chi value to remove from heatmap
This will save users many hours of copying and pasting from SPCImage to Excel, and then Excel to other graphing software.
Change History (18)
comment:1 Changed 9 years ago by cxallan
- Remaining Time set to 5.0
comment:2 Changed 9 years ago by jburel
- Sprint 2010-03-05 (4) deleted
comment:3 Changed 9 years ago by dzmacdonald
- Milestone changed from OMERO-Beta4.2 to Future
comment:4 Changed 9 years ago by dzmacdonald
- Milestone changed from Future to Unscheduled
comment:5 Changed 9 years ago by jmoore
comment:6 Changed 9 years ago by jmoore
- Milestone changed from Unscheduled to OMERO-Beta4.3
comment:7 Changed 9 years ago by dzmacdonald
- Component set to General
- Description modified (diff)
- Priority set to minor
comment:8 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.2.2
comment:9 Changed 9 years ago by jburel
- Owner changed from dzmacdonald to jburel
- Priority changed from minor to major
- Status changed from new to assigned
comment:10 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.2.2 to OMERO-Beta4.3
comment:11 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.2.1
- Sprint set to 2010-11-25 (20)
comment:12 Changed 9 years ago by jburel
comment:13 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.2.1 to OMERO-Beta4.3
- Remaining Time changed from 5.0 to 2.0
- Sprint 2010-11-25 (20) deleted
comment:14 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.2.1
- Sprint set to 2010-11-25 (20)
comment:15 Changed 9 years ago by jburel
- Milestone changed from OMERO-Beta4.2.1 to OMERO-Beta4.3
- Sprint changed from 2010-11-25 (20) to 2010-12-09 (21)
comment:16 Changed 9 years ago by jburel
- Remaining Time changed from 2.0 to 1.0
- Status changed from assigned to new
modify window, need to be tested with new script. see http://trac.openmicroscopy.org.uk/shoola/changeset/7808
comment:17 Changed 9 years ago by jburel
- Status changed from new to assigned
comment:18 Changed 9 years ago by jburel
- Remaining Time changed from 1.0 to 0
- Resolution set to fixed
- Status changed from assigned to closed
we should be ok for now.
We can create more tickets when we have feedback from David.
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You may also have a look at Agilo extensions to the ticket.
Referencing ticket #1970 has changed sprint.