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User Story #2053 (closed)

Opened 14 years ago

Closed 14 years ago

Last modified 14 years ago

BUG: IPLab TIFF import failures

Reported by:	omero-qa	Owned by:	cxallan
Priority:	minor	Milestone:	OMERO-Beta4.2
Component:	from QA	Keywords:	n.a.
Cc:	tom_dyar@…	Story Points:	n.a.
Sprint:	2010-03-19 (5)	Importance:	n.a.
Total Remaining Time:	n.a.	Estimated Remaining Time:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/2326/

Comment: These tif's that caused the errors were generated by IPLab, FYI.

loci.formats.FormatException: BitsPerSample length (1) does not match SamplesPerPixel (3)
	at loci.formats.tiff.IFD.getBitsPerSample(IFD.java:527)
	at loci.formats.tiff.IFD.getPixelType(IFD.java:557)
	at loci.formats.in.MinimalTiffReader.initFile(MinimalTiffReader.java:270)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:589)
	at loci.formats.FormatReader.setId(FormatReader.java:901)
	at loci.formats.ImageReader.setId(ImageReader.java:588)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:179)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
	at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:337)
	at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:431)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:364)
	at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)
	at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:308)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:209)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:162)
	at ome.formats.importer.gui.FileQueueHandler$1.run(FileQueueHandler.java:225)
	at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)

References

Change History (8)

comment:1 Changed 14 years ago by cxallan

Milestone changed from Unscheduled to OMERO-Beta4.2
Sprint set to 2010-03-19 (5)
Status changed from new to assigned
Type changed from task to User Story

comment:2 Changed 14 years ago by cxallan

Resolution set to fixed
Status changed from assigned to closed

(In [6375]) Updating to bio-formats:r6064 (Fixes #2053)

comment:3 Changed 14 years ago by cxallan

(In [6376]) Updating to bio-formats:r6064 (Fixes #2053)

comment:4 Changed 14 years ago by cxallan

Hudson build of OMERO-4.1 with fixes here:

http://hudson.openmicroscopy.org.uk/job/OMERO-Beta4.1/104/

comment:5 Changed 14 years ago by cxallan <cxallan@…>

(In [101cb69d7964838697616c465c1e611f91a4041f/ome.git]on branches 4_1, dev_4_1, dev_4_1_custom) Updating to bio-formats:r6064 (Fixes #2053)

git-svn-id: file:///home/svn/omero/branches/Beta4.1@6375 05709c45-44f0-0310-885b-81a1db45b4a6

comment:6 Changed 14 years ago by cxallan <cxallan@…>

(In [789ba8c30518f28396996b77c3d7d50a8f7f9bf3/ome.git]on branches 4_1, dev_4_1, dev_4_1_custom) Updating to bio-formats:r6064 (Fixes #2053)

git-svn-id: file:///home/svn/omero/branches/Beta4.1@6376 05709c45-44f0-0310-885b-81a1db45b4a6

comment:7 Changed 14 years ago by cxallan <cxallan@…>

(In [101cb69d7964838697616c465c1e611f91a4041f/ome.git]on branches 4_1, 4_1_custom, dev_4_1, dev_4_1_custom, josh/4.1-web-backport) Updating to bio-formats:r6064 (Fixes #2053)

git-svn-id: file:///home/svn/omero/branches/Beta4.1@6375 05709c45-44f0-0310-885b-81a1db45b4a6

comment:8 Changed 14 years ago by cxallan <cxallan@…>

(In [789ba8c30518f28396996b77c3d7d50a8f7f9bf3/ome.git]on branches 4_1, 4_1_custom, dev_4_1, dev_4_1_custom, josh/4.1-web-backport) Updating to bio-formats:r6064 (Fixes #2053)

git-svn-id: file:///home/svn/omero/branches/Beta4.1@6376 05709c45-44f0-0310-885b-81a1db45b4a6

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