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Task #2290 (closed)

Opened 9 years ago

Closed 9 years ago

BUG: ROI ClassCastException

Reported by: wmoore Owned by: jamoore
Priority: minor Milestone: OMERO-Beta4.2
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-04-30 (8)

Description (last modified by jmoore)

Bug in saveAndReturn(RectI).

Stack trace below.

Change History (4)

comment:1 Changed 9 years ago by wmoore 

======================================================================
ERROR: testBoxer (__main__.TestEmanScripts)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/integration/emanScripts.py", line 289, in testBoxer
    addRectangleRoi(gateway, x, y, width, height, image)
  File "test/integration/emanScripts.py", line 591, in addRectangleRoi
    gateway.saveAndReturnObject(rect)
  File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero_api_Gateway_ice.py", line 362, in saveAndReturnObject
    return _M_omero.api.Gateway._op_saveAndReturnObject.invoke(self, ((obj, ), _ctx))
InternalException: exception ::omero::InternalException
{
    serverStackTrace = ome.conditions.InternalException:  Wrapped Exception: (java.lang.ClassCastException):
[Ljava.lang.String;
	at ome.tools.hibernate.ListAsSQLArrayUserType$STRING2.getDataFromArray(ListAsSQLArrayUserType.java:163)
	at ome.tools.hibernate.ListAsSQLArrayUserType.nullSafeGet(ListAsSQLArrayUserType.java:274)
	at org.hibernate.type.CustomType.nullSafeGet(CustomType.java:132)
	at org.hibernate.type.AbstractType.hydrate(AbstractType.java:105)
	at org.hibernate.persister.entity.AbstractEntityPersister.hydrate(AbstractEntityPersister.java:2267)
	at org.hibernate.loader.Loader.loadFromResultSet(Loader.java:1423)
	at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java:1351)
	at org.hibernate.loader.Loader.getRow(Loader.java:1251)
	at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:619)
	at org.hibernate.loader.Loader.doQuery(Loader.java:745)
	at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:270)
	at org.hibernate.loader.Loader.loadEntity(Loader.java:1933)
	at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:86)
	at org.hibernate.loader.entity.AbstractEntityLoader.load(AbstractEntityLoader.java:76)
	at org.hibernate.persister.entity.AbstractEntityPersister.load(AbstractEntityPersister.java:3270)
	at org.hibernate.event.def.DefaultLoadEventListener.loadFromDatasource(DefaultLoadEventListener.java:496)
	at org.hibernate.event.def.DefaultLoadEventListener.doLoad(DefaultLoadEventListener.java:477)
	at org.hibernate.event.def.DefaultLoadEventListener.load(DefaultLoadEventListener.java:227)
	at org.hibernate.event.def.DefaultLoadEventListener.proxyOrLoad(DefaultLoadEventListener.java:285)
	at org.hibernate.event.def.DefaultLoadEventListener.onLoad(DefaultLoadEventListener.java:152)
	at org.hibernate.impl.SessionImpl.fireLoad(SessionImpl.java:1080)
	at org.hibernate.impl.SessionImpl.get(SessionImpl.java:997)
	at org.hibernate.event.def.DefaultMergeEventListener.entityIsDetached(DefaultMergeEventListener.java:385)
	at ome.security.basic.MergeEventListener.entityIsDetached(MergeEventListener.java:158)
	at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:234)
	at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:85)
	at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:869)
	at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:851)
	at org.hibernate.engine.CascadingAction$6.cascade(CascadingAction.java:279)
	at org.hibernate.engine.Cascade.cascadeToOne(Cascade.java:392)
	at org.hibernate.engine.Cascade.cascadeAssociation(Cascade.java:335)
	at org.hibernate.engine.Cascade.cascadeProperty(Cascade.java:204)
	at org.hibernate.engine.Cascade.cascade(Cascade.java:161)
	at org.hibernate.event.def.AbstractSaveEventListener.cascadeBeforeSave(AbstractSaveEventListener.java:451)
	at org.hibernate.event.def.DefaultMergeEventListener.mergeTransientEntity(DefaultMergeEventListener.java:305)
	at org.hibernate.event.def.DefaultMergeEventListener.entityIsTransient(DefaultMergeEventListener.java:282)
	at org.springframework.orm.hibernate3.support.IdTransferringMergeEventListener.entityIsTransient(IdTransferringMergeEventListener.java:59)
	at ome.security.basic.MergeEventListener.entityIsTransient(MergeEventListener.java:135)
	at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:237)
	at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:85)
	at org.hibernate.event.def.DefaultMergeEventListener.onMerge(DefaultMergeEventListener.java:84)
	at ome.security.basic.MergeEventListener.onMerge(MergeEventListener.java:75)
	at org.hibernate.impl.SessionImpl.fireMerge(SessionImpl.java:859)
	at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:843)
	at org.hibernate.impl.SessionImpl.merge(SessionImpl.java:847)
	at ome.logic.UpdateImpl.internalMerge(UpdateImpl.java:266)
	at ome.logic.UpdateImpl$2.run(UpdateImpl.java:120)
	at ome.logic.UpdateImpl$2.run(UpdateImpl.java:119)
	at ome.logic.UpdateImpl.doAction(UpdateImpl.java:304)
	at ome.logic.UpdateImpl.doAction(UpdateImpl.java:295)
	at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:117)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at ome.security.basic.EventHandler.invoke(EventHandler.java:144)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy63.saveAndReturnObject(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
	at $Proxy63.saveAndReturnObject(Unknown Source)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:592)
	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
	at ome.services.throttling.Callback.run(Callback.java:56)
	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)
	at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:64)
	at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
	at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:185)
	at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:365)
	at IceInternal.Incoming.invoke(Incoming.java:159)
	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
	at Ice.ConnectionI.message(ConnectionI.java:972)
	at IceInternal.ThreadPool.run(ThreadPool.java:577)
	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)

    serverExceptionClass = ome.conditions.InternalException
    message =  Wrapped Exception: (java.lang.ClassCastException):
[Ljava.lang.String;
}

comment:2 Changed 9 years ago by wmoore

(In [6767]) Fixed new script paths. Fails on saveObject(Rect). See #2290.

comment:3 Changed 9 years ago by jmoore

  • Description modified (diff)
  • Status changed from new to assigned

comment:4 Changed 9 years ago by jmoore

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from assigned to closed

(In [6775]) fix #2290 - Handling misparsing by Hibernate/Jdbc? (?) of String[][] into String[]

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