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Task #2335 (closed)

Opened 14 years ago

Closed 14 years ago

Scripting demo movies

Reported by: wmoore Owned by: wmoore
Priority: minor Milestone: OMERO-Beta4.2
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2010-05-27 (10)

Description (last modified by wmoore)

Scripting Service overview / use / writing style

http://users.openmicroscopy.org.uk/~wmoore/movies/4.2/Scripting1.mov

  • Idea is that you can add functionality to the server
  • Image processing happens on the server
  • Trusted vv User scripts (see other movies)
  • Scripts menu -> choose...
  • Combine_Images.py
    • Can download/view script
    • Show UI vv Parameter definitions.
    • Script naming convention and script description
    • Parameter types, description, defaults, min, max, options, optional
    • Fill in parameters and Run the script
    • Show Activities panel.
  • Roi_Movie_Figure.py (maybe)

User Script-writing Movie

http://users.openmicroscopy.org.uk/~wmoore/movies/4.2/Scripting2.mov

  • Intro to Scripting Guide pages and links to API, examples etc.
  • Use Insight to connect
  • Download server cd dist
  • Mention Ice (show .profile)
  • Start user processor: bin/omero -s host -u will script serve user
  • Download Add_Description.py
  • Upload to server bin/omero -s localhost -u demo script upload ../examples/ScriptingService/Edit_Descriptions.py
  • List scripts bin/omero -s localhost -u root script list user
  • Run script bin/omero -s localhost -u root script launch file=22 Dataset_ID=1
  • Edit script print image.name.val
  • Replace bin/omero -s localhost -u root script replace 23 script.py
  • In Insight...
  • Run script
  • This script is available to other users in my collaborative group, but they need their own user processor.

Admin workflow

  • Scripts will run directly on the server
  • Available to all users and groups
  • Scripting Guide pages...
  • Scripting service API / adminWorkflow.py - can edit
  • Download adminWorkflow.py to 'scripts' folder at root of /omero/util_scripts/ etc.
  • Download EMAN2/Boxer.py script - upload
  • Run from Insight.

Change History (15)

comment:1 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:2 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:3 Changed 14 years ago by wmoore

  • Owner set to wmoore

comment:4 Changed 14 years ago by wmoore

  • Status changed from new to assigned

comment:5 Changed 14 years ago by wmoore

(In [6888]) Example script for demo movie. See #2335

comment:6 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:7 Changed 14 years ago by jmoore

  • Sprint changed from 2010-04-30 (8) to 2010-05-13 (9)

comment:8 Changed 14 years ago by wmoore

  • Description modified (diff)
  • Summary changed from User scripting demo movie to Scripting demo movies

comment:9 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:10 Changed 14 years ago by wmoore

(In [7048]) Updating the script-writing workflow. See #2335.

comment:10 Changed 14 years ago by wmoore

comment:11 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:12 Changed 14 years ago by cxallan

  • Sprint changed from 2010-05-13 (9) to 2010-05-27 (10)

comment:14 Changed 14 years ago by wmoore

  • Description modified (diff)

comment:15 Changed 14 years ago by wmoore

  • Status changed from assigned to closed
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