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- Timestamp:
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05/11/10 21:26:17 (14 years ago)
- Author:
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wmoore
- Comment:
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Legend:
- Unmodified
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initial
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v1
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| 9 | 9 | * Segger http://sourceforge.net/projects/segger/ |
| 10 | 10 | |
| 11 | | Features of OMERO that will be used: |
| | 11 | == Outline of potential workflows: == |
| | 12 | |
| | 13 | === Import EMAN2 project === |
| | 14 | * Import a complete EMAN2 project (setting up Image-Image links) |
| | 15 | |
| | 16 | === Use Spider to pick particles, EMAN2 for rest === |
| | 17 | * Data imported into OMERO |
| | 18 | * Filter data (E.g. EMAN2 or Spider) |
| | 19 | * Use Spider to auto-pick particles - Save ROIs |
| | 20 | * Generate Images from ROIs |
| | 21 | * EMAN2 ctf correction on Server |
| | 22 | * EMAN2 classification - store results in Pytables / Tags |
| | 23 | * Export to do EMAN2 reconstruction locally |
| | 24 | |
| | 25 | === Maps, Masks, PDB === |
| | 26 | * Open the map in Chimera - segment with segger |
| | 27 | * Save segments as masks, linked to map |
| | 28 | * Browse map, masks and pdb in Open Astex Viewer. |
| | 29 | |
| | 30 | == Features of OMERO that will be used: == |
| 12 | 31 | |
| 13 | 32 | * Annotations: Projects/Datasets, Descriptions, Tags, Comments, File Annotations |
| … |
… |
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| 17 | 36 | * Measurement tool (viewing particle ROIs) |
| 18 | 37 | |
| | 38 | |
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