Task #2349 (closed)
Opened 9 years ago
Closed 9 years ago
BUG: ROI Figure
| Reported by: | jburel | Owned by: | wmoore |
|---|---|---|---|
| Priority: | critical | Milestone: | OMERO-Beta4.2 |
| Component: | Scripting | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | 2010-05-13 (9) |
Description
Run the ROI figure script on an greyscale image with only one channel
using the UI on the fly
Traceback (most recent call last):
File "./script", line 779, in <module>
runAsScript()
File "./script", line 772, in runAsScript
fileAnnotation = roiFigure(session, commandArgs)
File "./script", line 696, in roiFigure
mergedColours, width, height, imageLabels, spacer, algorithm, stepping, scalebar, overlayColour, roiZoom, roiLabel)
File "./script", line 453, in getSplitView
stepping, fontsize, showTopLabels)
File "./script", line 198, in getROIsplitView
merged = re.renderProjectedCompressed(algorithm, tIndex, stepping, proStart, proEnd)
File "/Users/jburel/Documents/svn/OMERO/trunk/dist/lib/python/omero_api_RenderingEngine_ice.py", line 183, in renderProjectedCompressed
return _M_omero.api.RenderingEngine._op_renderProjectedCompressed.invoke(self, ((algorithm, timepoint, stepping, start, end), _ctx))
omero.ApiUsageException: exception ::omero::ApiUsageException
{
serverStackTrace = ome.conditions.ApiUsageException: No active channel bindings found.
at omeis.providers.re.GreyScaleStrategy.findFirstActiveChannelBinding(GreyScaleStrategy.java:287)
at omeis.providers.re.GreyScaleStrategy.renderAsPackedInt(GreyScaleStrategy.java:160)
at omeis.providers.re.Renderer.renderAsPackedInt(Renderer.java:479)
at ome.services.RenderingBean.renderProjectedAsPackedInt(RenderingBean.java:559)
at ome.services.RenderingBean.renderProjectedCompressed(RenderingBean.java:583)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:592)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy73.renderProjectedCompressed(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:592)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:40)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy73.renderProjectedCompressed(Unknown Source)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:592)
at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
at ome.services.throttling.Callback.run(Callback.java:56)
at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:132)
at ome.services.blitz.impl.RenderingEngineI.renderProjectedCompressed_async(RenderingEngineI.java:386)
at omero.api._RenderingEngineTie.renderProjectedCompressed_async(_RenderingEngineTie.java:274)
at omero.api._RenderingEngineDisp.___renderProjectedCompressed(_RenderingEngineDisp.java:560)
at omero.api._RenderingEngineDisp.__dispatch(_RenderingEngineDisp.java:1612)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
serverExceptionClass = ome.conditions.ApiUsageException
message = No active channel bindings found.
}
Change History (3)
comment:1 Changed 9 years ago by wmoore
- Status changed from new to assigned
comment:2 Changed 9 years ago by wmoore
comment:3 Changed 9 years ago by wmoore
- Status changed from assigned to closed
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(In [6961]) Fixing Roi_Figure bug. See #2349