User Story #2353 (closed)
Opened 14 years ago
Closed 14 years ago
Add annotation type for ontology terms
| Reported by: | jamoore | Owned by: | |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.2 |
| Component: | Model | Keywords: | n.a. |
| Cc: | wmoore, jburel, ajpatterson, jrswedlow | Story Points: | n.a. |
| Sprint: | n.a. | Importance: | n.a. |
| Total Remaining Time: | n.a. | Estimated Remaining Time: | n.a. |
Description
During 05-13 conference call, the addition of a term for annotations was discussed. A follow-up discussion took place on 5-14 (see notes below).
Change History (4)
comment:1 Changed 14 years ago by jmoore
comment:2 Changed 14 years ago by jmoore
comment:3 Changed 14 years ago by ajpatterson
Changes made to SA.xsd in working copy http://www.ome-xml.org/changeset/588
comment:4 Changed 14 years ago by jmoore
- Resolution set to fixed
- Status changed from new to closed
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- annotations / ontologies -- ... -- definition of namespace -- do we trust the descriptions of users in common space -- supporting the creating of group ontologies ?? --- perhaps a subset of some real ontology --- use TagAnnotations or UrlAnnotations -- boolean with "verified"? -- Jean: don't want to put the burden for lookup on clients -- Josh: don't want to have "definition"/"description" in our data model -- Will: support OLS and perhaps a few other ones -- What do people want to enter? PW:000007 or http://ebi.ac.uk..../PW:... -- Josh: we can do equivalency in the ontology -- Also start looking at entering terms on import -- Rename UrlAnnotation? --- Jean-Marie: Choosing OntologyAnnotation term for political reasons? --- Josh: "URL" tells user we want to see something resolvable not "GO:..." --- Will: User probably wants to see "GO:..." and search for "GO:..." not http. --- Andrew: Use "URI"; is that what people want to put in there? --- Will: do we then say our default resolver is EBI? --- Andrew: OnotologyAnnotation gives people a clue -- Service should allow a group to import (OBO?) files -- Looking at interaction with Phenote! -- Reusing Namespace for pointing at ontologies? --- Add locations to NS --- Add version to NS? Maybe. --- How do we detect an ontology-namespace? different service -- DB Actions --- Name? OntologyTermAnnotation --- Fields? term --- Unique? ns+term (UNIQUENESS) ---- Public or not public? @Discuss in Paris ---- What do different annotations on different copies of same term mean? --- Url? Remove URL. (And ThumbnailAnnotation) --- Terms or Tags for a lab? ---- Use tags ---- Possibly need a "LOCKED" flag for tags (ownership?) -- XML Actions --- Add TagAnnotation --- Add TermAnnotation --- Unify naming of String/Comment --- Unify capitalization of Xml/XML (HOLD-OFF)